Nocardia farcinica NCTC11134: ERS450000_01148
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Entry
ERS450000_01148 CDS
T04524
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ERS450000_01148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_01148
Enzymes [BR:
nfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ERS450000_01148
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ERS450000_01148
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DUF6459
Motif
Other DBs
NCBI-ProteinID:
CRY75090
UniProt:
A0A0H5NGS6
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All DBs
Position
1:1146257..1147144
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AA seq
295 aa
AA seq
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MKWDGMRAVADAADGQCLLYSRNGKQVAGSFPEIVEAVAAAVGPHRVVLDGEIIAPEGAR
GAPSFSRLQRRMHVRAPTPQLIREVPVLYMLFDLLALDGHATVRLPYTERRDLLARLDIA
RPPLQLSPSWTDVDPAELAAAATDNGLEGLVAKRLDSVYQPGERSRAWLKMPFRRTTEAV
IAGWLPGNGPFQKSFGSLVLGAHDAQGRLVHIGNVGTGWKQSERTRLRQRLDEIARPDSP
FDVPAPRPVAALAHWVSPELVADIEYREATAEGLRHPSWRGLRIDKDPAEITWPA
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgggacgggatgcgggcggtggccgacgccgccgacgggcagtgcctgctctac
agtcgcaacggcaagcaggtcgccggatcgttccccgagatcgtcgaggccgtggcggcc
gcggtcggcccgcaccgggtggtcctcgacggggagatcatcgcccccgaaggcgcccgg
ggcgcgccgtcgttctcccggttgcagcgccgcatgcacgtgcgcgccccgacaccgcag
ctcatccgcgaggtgccggtgttgtacatgctgttcgatctgctcgcgctcgacgggcac
gccaccgtgcgtctgccctacaccgagcgccgcgacctgctcgcccggctcgacatcgcg
cgcccgccgttgcagctgtcgccgagctggaccgatgtcgaccccgccgagctggccgcg
gccgccaccgacaacggcctggaagggctggtcgccaaacggctcgattcggtgtatcag
cccggggagcgcagccgcgcctggctcaagatgccgttccgcagaacgaccgaagcggtg
atcgccggatggttgccgggtaacggtccgttccagaagtcgttcgggtcactggttctc
ggtgcacacgatgcacaggggcggctggtgcacatcggcaacgtcggcaccggatggaag
cagtccgagcgcacccggttacggcagcggctcgacgaaatcgcccgcccggactcaccg
ttcgacgtgcccgcgccccgcccggtcgccgcgctcgcccactgggtctcccccgaactc
gtcgccgacatcgagtaccgcgaagccaccgccgaaggactgcgccacccgagctggcgc
gggctgcgcatcgacaaggacccggccgagatcacctggcccgcctga
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