Nocardia farcinica NCTC11134: ERS450000_05645
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Entry
ERS450000_05645 CDS
T04524
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03030
DNA replication
nfr03410
Base excision repair
nfr03420
Nucleotide excision repair
nfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERS450000_05645 (ligA_2)
03410 Base excision repair
ERS450000_05645 (ligA_2)
03420 Nucleotide excision repair
ERS450000_05645 (ligA_2)
03430 Mismatch repair
ERS450000_05645 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfr03032
]
ERS450000_05645 (ligA_2)
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_05645 (ligA_2)
Enzymes [BR:
nfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ERS450000_05645 (ligA_2)
DNA replication proteins [BR:
nfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ERS450000_05645 (ligA_2)
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ERS450000_05645 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERS450000_05645 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
ERS450000_05645 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ERS450000_05645 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
CRY83717
UniProt:
A0A0H5P7R9
LinkDB
All DBs
Position
p2:2316242..2318293
Genome browser
AA seq
683 aa
AA seq
DB search
MRWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDLRTPDSPTQLVGGG
FATDFTPVDHLERMLSLDNVFDVDELRAWAARVEAETGPDLHYLCEVKIDGVALNLVYER
GKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRLADFEAL
NAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQFEAYRA
LSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETSLQRRLGATSR
APRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLHNASEVK
RKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHCPECGTELAPEKEGDADI
RCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDLLQSGAIGDEGDLFDLDEARLLT
TSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVLVGLSIRHVGPTAARALAAEFGSMERI
EQASVDELAATDGVGPTIAAAVAEWFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGL
SIVVTGSLQGFSRDGAKEAILARGGKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILD
EEGFVRLLAEGPAAVAAEEPESG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgcggtggcagcggctcgccgaggaggtgcgcgagcatcagttccgctattacgtccgt
gatgccccgatcatctccgacggcgagttcgatgccctgctgcgcgagttgcaggagctg
gaggaccggcatccggatctgcggacgccggattcgccgacgcagctggtgggcggcggg
ttcgccaccgatttcaccccggtggatcatctcgagcggatgctgtcgctggacaacgtg
ttcgatgtcgacgagttgcgcgcctgggcggcgcgggtggaggccgagaccggcccggat
ctgcactacctgtgtgaggtgaagatcgacggcgtggcgttgaacctcgtgtacgagcgg
gggaagctggtgcgcgcggcgacccgcggtgacggccgcaccggtgaggacgtcacgctg
aacgcccgcacgatcgaggatgtgcccggcgagttgtccgcggggggcgagttcccggtg
ccggagctgctggaggtgcgcggcgaggtgtatctgcggctcgcggatttcgaggcgctg
aacgccgcgatcgtggcggagggcaaaccgccgtacgccaatccgcgcaacacggcggcg
gggtcgttgcggcagaaggatcccgcggtgacggcgcggcgccggttgcggatgatctgt
cacgggctgggccggatcgagggctacaccccggcgtcgcagttcgaggcgtatcgggcg
ctgtcggcgtgggggctgccggtttccgagcacacccgccgggtgcggggcatcgacgcg
gtgatcgagcgggtggcctattggggcgagcaccgccacgacatcgagcacgagatcgac
ggccaggtgatcaaggtggacgagacgtcgctgcagcggcggctcggcgcgacctcccgg
gcgccgcggtgggcgatcgcctacaagtatccgccggaggaggcgacgaccaagctgcgc
gccatcgaggtcaacgtcggccgcaccggccgggtgacgccgttcgcggtgatggagccg
gtggtgatcgccgggtcgacggtggcgatggcgacgctgcacaacgcgtcggaggtcaag
cgcaagggcgtgttgatcggcgacacggtgaccatccgcaaggccggtgacgtgattccg
gaggtgctcggtccggtggtggacgcgcggaccggcgccgaacgcgagttcgtgatgccc
acgcactgcccggagtgcggtaccgagctggcgccggagaaggagggtgacgccgacatc
cgctgcccgaaccagcggtcctgcccggcgcagctgcgggagcgggtgtatcacgtggcc
ggccgcagcgctttcgacatcgaggcactcggatacgaggcggccatcgacctgttgcag
tccggtgcgatcggcgacgagggcgacctgttcgatctggacgaggcccgcctgttgacc
acctcgctgttcaccaacaagaacgggagtctgtcggcgaacggcaaacggctgctggag
aatctggacgcggccaaggaccggccgctgtggcgggtgctggtcgggttgtcgatccgg
cacgtcggcccgaccgcggcgcgggcgctggccgcggagttcggcagcatggagcggatc
gagcaggcgagcgtggacgagctggccgccaccgacggggtggggccgaccatcgcggcg
gcggtggcggagtggttcaccgtcgattggcaccgggcgatcgtggcgaagtggcgcgcg
gccggggtgcggatggtcgacgagcgcgacgagtcgatcgaacgcacgctggaggggctg
tcgatcgtggtgacgggctcgttgcaggggttctcccgcgacggcgcgaaggaggcgatc
ttggcgcggggcggtaaggcggccggttcggtgtcgaagaagacggcgttcgtcgtggtc
ggggacgcgccgggtgccaaggcggccaaggccgaggagctgggcgtgccgatcctggac
gaggaggggtttgtgcggttgctcgcggaggggcccgcggcggtcgccgccgaggaaccg
gaatcgggctag
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