KEGG   Nothobranchius furzeri (turquoise killifish): 107381023Help
Entry
107381023         CDS       T05163                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    107381023 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nfu03400]
    107381023 (lig4)
Enzymes [BR:nfu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107381023 (lig4)
DNA repair and recombination proteins [BR:nfu03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107381023 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT_2 BRCT RNA_ligase APG17
Motif
Other DBs
NCBI-GeneID: 107381023
NCBI-ProteinID: XP_015807974
UniProt: A0A1A8UEV8
LinkDB All DBs
Position
sgr06
AA seq 909 aa AA seqDB search
MEGTSKHGAPGEPTVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHSALHK
ENPQTTDSFYSAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFASMAYFVLKNRCASQGNLSIKEVNDFLDSVAINNASKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIELFSAFKPMLAAVANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPHIHNAFKRDIVSCILDGEMMAYNPTAETFMQKGSKFDIKKLM
NDSELQTCFCVFDVLLANNRKLGKETLKHRHEILQTIFTPINGRIHVVPKTEVRTMQQVV
GALNDAIDSREEGIMVKDPLSLYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAIAEAPKPGEKPSVFHSFCRVGSGYTMKELYDLGLKLAKHWKVYKKKDPP
ASILCGTEKPEVYIEPCNSVIVQVKAAEIVASDVYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLNIDYNEPQKKKRKLPAKTKKVVGVIDHFKPQDLTGVSKET
DMFEDVEFCILNGSEDHPKSELEKGVARCGGFVVQNPGRDTYCVIAGVENMRVKNLISSN
QHDVVWASWLVECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDIYGDSYFVDTDEQQLRE
VFGRISNVNAAGVNAAQVEERYGWDDLPTSMFRPFTVYLDVLANIGDPKSTVPVTSLDIR
ALEVRYHGGTVVQKLEEGVSHVIVEGEERLLDLRTLRRSFKKKFKIVRDKWVTDSVTAGH
LVDDTDYLV
NT seq 2730 nt NT seq  +upstreamnt  +downstreamnt
atggaggggacttccaaacatggtgctccaggtgagccaactgttgctgctcaggtcccg
tttcttcacttgtgcaccacgttggaaaagatccagaaatccaaacttcgtccagataaa
tccaagatcctgggggatttcattgaatcgtggcgaaagtttcattctgccctccacaaa
gaaaacccccaaactacagactccttctactctgctatgcgcctcatcgttcccccgttt
gagcgagagcgaatggcgtatggaataaaagaaagcatgctagctaagctttatatcgat
gttttaggccttccaaagaatggcccagaggccaataagctgctgaactatcgcgctcca
accacatcccaaggagaagctggagactttgccagcatggcatactttgtgttgaagaac
cgatgcgcgagccaaggaaatcttagcatcaaagaggtcaacgacttcctggactcagtt
gcaataaacaatgccagcaagcaaaaggaccttgttaaaaagagtctcctgcacctcatc
acccaaagctctgctcttgagcaaaagtggctcattagaatgattctgaaagatatgaag
cttggagtcagtaaggaaacggttctccaagtcttccacccggatgctgcagagctctac
aacgtcaacacggacttgaacaaggtgtgccagcagctccacaacccttccgtgtcctta
agtgaagtttctatcgaacttttctccgcctttaagccgatgttggcagctgtggctaat
attcgcaacgttgagaagcaaatgggcaacagccctttttacattgagacaaagctggat
ggggaacgtattcagctgcacaaagacggagacgtgtacaagtacttcagcagaaacgct
tttgaatacacgcagcagtttggtggctcgcccctagaaggatcgctgactcctcatatt
cataacgctttcaaacgcgacattgtgagctgcatcctggatggagagatgatggcgtac
aacccaacggcggagacgttcatgcagaaagggagcaagttcgacatcaagaagctgatg
aacgactcagagttgcagacatgcttctgcgtgtttgacgtgttgttggcgaataaccga
aagcttggcaaagaaacgctaaaacaccgccatgagatccttcagaccattttcacaccg
atcaatggaaggattcatgtggtgccgaagactgaagtccgaaccatgcagcaggtggtc
ggcgcacttaatgatgccattgacagcagagaagagggaatcatggtaaaggatcctctg
tccctctacaagcctgataaacgaggagaaggctggctaaaaataaaaccagagtacgtg
gacggcttgatggacgagctggacctactgattgttggcggctactggggaaaaggaaga
cgaggtgggatgatgtctcatttcttatgtgccattgctgaagccccaaagcctggcgag
aagccatcagttttccattccttctgtcgcgttggctcaggctacaccatgaaagagttg
tatgaccttggtttgaagcttgccaagcactggaaggtctacaagaaaaaggaccctcca
gcatccatcctgtgtgggacagagaaaccagaggtttacatcgaaccgtgcaactcggtc
atcgtccaggttaaggcagctgagattgttgcaagtgacgtgtataaaaccaactgcacg
ctgcgcttccccagaattgaaaagatccgcgacgataaggaatggcatcagtgtatgacc
ctggcagagctagatcagttccgtagcaaggcgtctgggaaactggcctcacggcacctt
aacattgactataatgaaccacaaaaaaagaagaggaagctgccagccaaaaccaagaag
gtggttggtgtaattgaccacttcaagccccaagacctgaccggggtttccaaggagacc
gatatgtttgaagatgtagaattctgcatcctgaacggctctgaagatcatccgaagtct
gaactggaaaaaggcgtagccaggtgtggcggtttcgtggttcaaaacccaggacgggac
acctactgcgtgattgccggcgtggagaacatgcgcgtgaagaatctgatttcatccaac
cagcatgatgtcgtttgggcctcttggctggtggagtgccttgaccagaaggaagtggtg
ccatggcaacctcgccacatgattcacatgtcaccctcaacacgggaacactttgccaag
gagtatgacatctatggtgacagctacttcgtggatactgatgaacaacagctgcgtgag
gtgttcggccgaataagcaacgtcaatgcggcaggggtgaacgcagctcaggtagaggag
cgttatggttgggatgaccttcccacgagcatgttcagaccattcacagtctacctggat
gttctcgccaacatcggcgatccaaaaagcaccgtacccgtcaccagtctagacatcaga
gcactggaggttcgctaccatggaggtacggtggtacagaagttagaagaaggagtttca
catgtgattgtggaaggagaggagagacttctggatctgaggaccctgcggcgctctttt
aagaagaagtttaaaatcgtgagagacaagtgggtgactgattcagtcacagcagggcat
ctggtagacgatactgactacttggtttga

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