KEGG   Nothobranchius furzeri (turquoise killifish): 107391463Help
Entry
107391463         CDS       T05163                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:nfu01009]
    107391463 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nfu03019]
    107391463 (hdac6)
   04131 Membrane trafficking [BR:nfu04131]
    107391463 (hdac6)
   03036 Chromosome and associated proteins [BR:nfu03036]
    107391463 (hdac6)
Enzymes [BR:nfu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107391463 (hdac6)
Protein phosphatases and associated proteins [BR:nfu01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     107391463 (hdac6)
Messenger RNA biogenesis [BR:nfu03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     107391463 (hdac6)
Membrane trafficking [BR:nfu04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    107391463 (hdac6)
Chromosome and associated proteins [BR:nfu03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     107391463 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 107391463
NCBI-ProteinID: XP_015824265
UniProt: A0A1A8U4B6
LinkDB All DBs
Position
sgr15
AA seq 1074 aa AA seqDB search
MQAGSEPPGPGLKSARRSPRLSSQASSCEEREKEEDRRSLQEVKRRGRMERSREQQEEEL
SGKLKTLDLSSRAAASGTGLVYSEIFTHHQNLWDPCHPESPDRILSIMAELKKQELLGVC
VLVEPREATDEELLLAHTKPYISMIESTQTMTQQELQMLSDKYDSVYLHPESFQVGVTAV
GSVLQLVDQVMTSELRNGFAVIRPPGHHAESNEPNGYCVFNNVAIAARYAQTHHAVRRVL
IVDWDVHHGQGLQHQFQEDPSVLYFSVHRYENGSFWPHLPESDCSFTGTGRAEGRTVNLA
WNQTGMTDADYITAFQQVLLPVAFEFQPELVLVSAGFDAAVRDPKGEMCVSPQCFHILTH
MLMSLAEGRLVLALEGGYNLQTTAESVVACIRALLGGACPHLDTPPAPSDSALESISQTV
SALIPHWASLQVLGGSLAEGDVIRASTGERSVTIANRSPSVTTTTGLVYDERMMEHMNLW
DRHHPEQPQRIFKIFSKHQQLGLVDRCQQIPSRLATEEELAMCHSKQHIELMKATAEMKP
RDLQRLGDEFNSIFINNQSFQCAQLAAGSCFNAVDSILSGQVSNGVAIVRPPGHHAERDV
PCGFCLFNTAALAARHAQNVVRHSRLRVLILDWDVHHGNGTQHMFEEDDSVLYVSLHRYD
NGMFYPSSEDGAPNKVGVAKGVGFNVNVAWSGGRMGDSDYLAAFHHVVMPIAREFNPDLV
LVSAGFDAARGDPLGGYNVTPAGYAHLTHMLMSLAGGRVLLILEGGYNLTSISDSMAMCT
SVLLGDPPPSLSMPLPPPHYGAVKTIVEVIQNHAPYWKSLRIHVPESVLMSLSSPEHRRK
RSSKGKGRKSDQLPPPPETEVSTTAHDLEQLAQGLADLDISQASASQPPPVTSTPVGGAR
TKVRLSSEVKGLKKVESEVSPATESVLAQSIAGAEAELEAAGACGYSKPEVSLELTCGAE
TTLYCVNPLTWCPHLDAVKPLPPSGVDIFAQCEDCSSDSENWICLTCYQVYCGRYVNEHM
VVHGTASEHPMVLSLSDLSVWCYLCESYVYNQVLFEARNAAHFAKFGEEVPPQS
NT seq 3225 nt NT seq  +upstreamnt  +downstreamnt
atgcaggctggatcagaacctccaggacctggactcaagtccgccagaaggtcgcctcgt
ctatcttcacaggcttccagctgtgaagaacgagagaaggaggaggacagacgcagcctg
caggaggtgaagaggagaggtaggatggagaggagcagagagcagcaggaggaggagctg
agcggcaagctgaagacgctggatctgtccagcagggctgctgccagtggaaccggtctg
gtttactccgagatcttcacgcaccatcagaacctgtgggatccttgtcacccggagagt
ccggaccgcattctgtccatcatggcggagctgaagaagcaggagctgctgggtgtgtgt
gttctagtggagcccagagaagctacagacgaagagctgctgctcgcgcatacgaaacct
tacatcagcatgatagagtcgacccagaccatgactcagcaagagctccagatgctgtcc
gacaaatacgactcggtttacctccaccctgagtccttccaggtgggtgtgacggctgtt
ggttccgtcctccagctggtcgatcaggtcatgacctctgaactcaggaatggatttgct
gtgatcagacctccaggacaccatgctgagtctaacgagcccaacggttactgcgtgttc
aacaacgtggccatcgcagctcgatacgctcagacccaccacgccgttcgcagggtgttg
atcgtggactgggacgtccatcatggtcaagggctccagcaccagttccaggaggatcca
agcgtcctgtactttagtgtccacaggtatgagaatgggtctttctggcctcacctgccg
gagtcggactgcagcttcactggaacgggacgagctgagggaagaactgtgaacctggcc
tggaaccagacggggatgactgacgctgattacatcacagcattccaacaagttctgctg
cctgttgcctttgaatttcagcctgagctggttctggtctctgctggattcgatgctgca
gtcagagatccgaagggggagatgtgtgtgagtcctcagtgtttccatattctgacccac
atgctgatgagtttggctgaaggacgacttgttctcgctctcgagggaggttataacctg
cagacgacagcagagagtgtagtagcttgcatcagagctctgctgggcggagcttgtcct
catctggacaccccccctgctccctctgatagtgctctcgagtccatctctcagaccgtc
tcagctttgattccacactgggcctcgctgcaagtcctgggcggctcattggctgagggt
gatgtcatcagagcatcaacaggtgagaggagcgtcaccattgctaaccgctccccctcc
gttaccacgacaactggtctagtctatgatgagaggatgatggagcacatgaacctgtgg
gacaggcatcaccccgaacagccgcagagaatatttaagatcttctccaaacaccagcag
ctgggactggtggaccgctgccagcagatcccatctcgcctggcaacggaggaggagctg
gccatgtgccacagcaagcagcacatcgagctgatgaaggccactgcagagatgaagcct
cgagacctccagagactgggagacgagtttaactccatcttcatcaacaaccagagcttc
cagtgcgcccagcttgcagcaggaagctgcttcaatgctgtggacagcatcctgagtgga
caggtgagtaacggagtggccatcgtacgtcctcccggtcatcatgctgagagagacgta
ccctgtggattctgtctcttcaacaccgcggctctggctgcgcgccacgcccaaaatgtc
gttcgccattctcggttgcgagtcttgatcctcgactgggatgttcaccatggcaacggg
actcagcatatgtttgaagaggatgacagcgtcctgtacgtctccctccatcgctatgac
aacggcatgttctacccatcttcagaggacggcgctcctaacaaagtgggagtggccaaa
ggggtgggatttaatgtgaacgtggcttggagcggaggaagaatgggcgactcggactac
ctcgctgcctttcaccatgttgtcatgccgattgcccgagagttcaaccctgatttggtt
ctggtgtctgctgggtttgatgcagctcggggggatccgttgggtggatataatgtgact
cctgcaggatacgcacacctcacacacatgctgatgtcactggctggggggcgtgtccta
ctcatcctggaggggggttataatctaacctccatctctgactccatggcgatgtgcacc
agcgtgttgctaggcgacccaccaccatccttgtccatgccccttccccctccgcattac
ggtgctgtgaaaacaatcgttgaggtaatccagaaccacgccccctactggaagtctctg
aggattcacgttccagagtcagtgctgatgtccctgtcctccccagagcatcgtaggaaa
cgtagttctaaaggaaaaggcagaaagtctgaccaactgccacctcctcctgaaacagag
gtttctacgacggcacacgatctggagcagcttgcacagggattggctgatctagacatc
agtcaagcttcagccagtcagccgcctcctgttacgtccaccccagttggaggagcaagg
acgaaggtccgtctgagttcagaggtcaaaggtcttaaaaaggtggagtcagaggtcagc
ccagcaacagagagtgtgctggctcagagcattgctggagcagaggcggagcttgaggca
gcaggcgcatgtggttattcaaagcccgaggtgtctctggaactgacctgtggtgctgag
accactctttattgtgtcaaccccctgacctggtgtcctcacctggatgctgttaagccc
ctccccccctcaggtgtagacatctttgctcagtgtgaggactgcagctcggattctgag
aactggatctgtctcacctgctaccaggtgtactgtggccgctacgtcaacgagcacatg
gtggttcacggcaccgcgtcggaacatcccatggtgctcagcttgtcggacctgtctgtg
tggtgctacctgtgcgagtcctatgtctacaaccaggttctgtttgaagccagaaacgca
gctcactttgccaagtttggagaggaggtccctccacagagctga

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