Nothobranchius furzeri (turquoise killifish): 107395975
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Entry
107395975 CDS
T05163
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfu03041
]
107395975 (ddx1)
03016 Transfer RNA biogenesis [BR:
nfu03016
]
107395975 (ddx1)
Spliceosome [BR:
nfu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107395975 (ddx1)
Transfer RNA biogenesis [BR:
nfu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107395975 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
107395975
NCBI-ProteinID:
XP_015830944
UniProt:
A0A1A8TY53
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETIKDQQEGKKGRAPVKTGGTIFNTWQMNPYDRSTQFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVSCQDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKNQISFSKNGNDLGLAFEIPQNLRNQAFFASCVLKNAELKF
NFGGEHFKFPPKEGFVALDQASEGHTVKSSQTGSAKVSQVKTSSNAPKALIIEPSKELAE
QTFNNVKQFKKYVDNPKLRELLVIGGVAAKEQLAVLEQGVDIVVGTPGRLDDLISTGKLS
LAQVRFLVLDECDGLLIAGYTDFINRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRLWERLGKNHIQTDEVHAKDNTRPGVG
SPEMWSEAIKVLKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQHGGGPDSKGHQL
SCVCLHGDRKPNERKTNLERFKRKEVRLLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELALLER
EAQTSFLHLGYLPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagccttttctgaaatgggagttatgcctgaaatagcgcaggctgtggaagagatg
gactggctactacccacggacatccaggcagagtctattcccctgattctcggtggagga
gatgtactcatggctgcagaaaccggaagtggcaaaacaggagcgttcagtatcccagtg
attcagattgtgtatgagaccataaaggatcagcaggagggcaagaagggcagagctcca
gtcaaaactggaggaactattttcaacacctggcagatgaacccatatgatcgtagcaca
cagtttgctatcggacctgatggcctgtgctgtcagagcagggagtttaaagagtggcac
ggctgtcggtccactaaaggcgtcacaaaaggaaagtactactatgaagtgagctgtcag
gaccagggtttgtgccgtatcggatggtccaccagtcaagcagcactggatctgggaact
gataagtatggctttggctttggcggcactggaaagaagtccaacaacaagcagtttgac
agctatggagaggagttcaccatgcatgacacgatcgggtgctacctggatctagacaag
aatcagatttcattctctaaaaatggaaacgacctgggtttggcatttgaaatccctcaa
aacctgaggaatcaggctttcttcgcctcctgcgttctcaagaatgctgagctgaagttt
aactttggaggagaacattttaaattcccacctaaggaagggtttgtggctctggatcag
gcatcggagggccacacagtcaaatcttcacagacaggcagtgccaaagtgagtcaagtg
aaaacgtcatcaaatgctcccaaagccctgatcattgagccgtctaaagagctggcagag
caaaccttcaacaacgtcaagcagtttaaaaaatatgtggataatcctaaattaagggag
cttctggtgatcggtggtgtggcagccaaagaacagctggctgtgctggaacagggggtg
gacatagtggtgggaacgcccggcaggctggatgacctcatctccaccgggaagctgagt
ctggcccaagtccgttttctggtcctggatgagtgtgatggcctcctgattgcaggctac
actgattttatcaacaggatccataaacaaatccctcaggtgacatccgatggcaaaagg
ctgcaggtcatcgtgtgttcggccacacttcactcctttgatgtgaagaagctgtctgaa
cgcatcatgcactttcccacctgggtggacctgaagggggaggactcggttccagagacc
gtccatcatgtggtggtccccgtcaacccaaagaccgaccgtctgtgggaacgcctcggg
aagaaccacatccagacggatgaagtccatgccaaagacaacacccgaccaggagtcggt
tctccagaaatgtggtcagaagctataaaggtgctgaagggggagtacacgatccgagca
attaaagaacacaaaatggaccaagccataatcttctgccgcaccaagatcgactgtgac
aacatggagcagtacttcatccagcatggaggaggccccgacagcaaaggtcaccagtta
tcctgcgtttgtcttcacggtgatcggaagcccaatgagaggaaaaccaacttggagcga
ttcaagagaaaagaagtgaggctgctgatctgcacagacgtagccgccagaggcatcgac
atccacggcgttccctatgtgataaacgtcaccctgccagacgagaagcagaactacgtc
caccgcatcggcagagtcggacgagctgagagaatgggacttgctatctctctggtggcc
atggagaaagaaaaggtgtggtaccacgtgtgcccgaacagaggcagaggctgctacaac
acccggctgaaggaagacggaggctgcaccatttggtacaacgagaaggagctcttgtca
gacatcgaggagcacctgaagtgcaccatcactcagtgtgagccagatatcaaagtacca
gtggatgagtttgatgggaaggtgacctacggacagcgcagggctttaggaggtggaaac
tacaagggccatgtggatgtcctggccccaacagtccaggagctggcccttctagagagg
gaagctcagacgtccttcctccacctgggatacctgccaaaccagctgttcagagccttc
taa
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