KEGG   Candidatus Nitrososphaera gargensis: Ngar_c22260Help
Entry
Ngar_c22260       CDS       T02305                                 

Gene name
lig
Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nga  Candidatus Nitrososphaera gargensis
Pathway
nga03030  DNA replication
nga03410  Base excision repair
nga03420  Nucleotide excision repair
nga03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Ngar_c22260 (lig)
   03410 Base excision repair
    Ngar_c22260 (lig)
   03420 Nucleotide excision repair
    Ngar_c22260 (lig)
   03430 Mismatch repair
    Ngar_c22260 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nga03032]
    Ngar_c22260 (lig)
   03400 DNA repair and recombination proteins [BR:nga03400]
    Ngar_c22260 (lig)
Enzymes [BR:nga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ngar_c22260 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     Ngar_c22260 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Ngar_c22260 (lig)
DNA replication proteins [BR:nga03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Ngar_c22260 (lig)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Ngar_c22260 (lig)
DNA repair and recombination proteins [BR:nga03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Ngar_c22260 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     Ngar_c22260 (lig)
   MMR (mismatch exicision repair)
    Other MMR factors
     Ngar_c22260 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AFU59156
UniProt: K0ICR2
LinkDB All DBs
Position
complement(1730833..1732626)
Genome map
AA seq 597 aa AA seqDB search
MDFAPIVETFEQMEQTSSRLALTEYLVALLRKTPPDIIDKVTYLIQGKLYPDYEGIELGV
AERMVIRAIASSSGKDQLQIEKLYQKTGDLGDAAGEAMKSKSQSTLFSEPMTVERVYSTF
DRVARTTGPGSQETKLRLISSLLNDATAAEGRYIIKFVMGQLRLGIADYTVLDALAVAFT
GDKANRQVLENAYNVSSDLGTVARLLATKGLDAVKSIKITLFKPIRPMLAERIRTAEEAL
ERMEGKAAVEYKLDGERVQLHKGKQNVELFSRRLEKITSHYPDVAEAIKSIKSEVILEGE
VVAINAETGDYLPFQELMHRRRKYGVEEAMENYPVVMNFFDVLYVDGKSKTELTYMERRK
LLKKIIDAVKDDNKVRLIEQTIATKPEEIDRFMAAAIEDGCEGVMIKQLSSTYRAGAREY
AWVKLKREYRSDLADTLDLVVVGALHGRGRRTGKYGALLLAAYDQKTDMFQSVTKVGTGF
TDVHLEQFYNELEKHIINQRHARVQTGMDMDVWFEPNMVIEVIASEITLSPSHAAALNAL
RPGYGLALRFPKFTGKIRDDKKPEDATATEEIVEMYRRQLKVAGPSYAAEAEGEEGG
NT seq 1794 nt NT seq  +upstreamnt  +downstreamnt
ttggactttgcgcccatagtggagacatttgagcagatggagcagacctctagcaggctt
gcgctcaccgaatacctcgtcgccctgttgaggaagacgcctcctgacatcatcgacaag
gtgacctacctcatacagggcaagctgtaccccgactatgaaggcattgagctgggggtg
gcagaaagaatggtcataagggcgatagcgagctcatcgggcaaagaccaactgcagata
gaaaagttataccaaaagacgggcgacctaggggatgcggccggcgaggcaatgaagtca
aaaagccagtccactctcttttcagagcccatgacagttgagcgggtgtattctacattt
gacagggtcgcgcgcaccactggcccgggctcgcaggaaaccaagctgcgccttataagc
agcctgctcaacgacgctactgctgcagaaggccgctacatcataaaattcgtcatgggt
cagctgcggctcgggatagcggactataccgtgcttgacgcgctggcagtcgcgttcact
ggcgacaaggcaaacaggcaggtgcttgaaaacgcatacaacgtttcaagcgaccttggc
acagtcgccaggctgcttgccacaaagggacttgatgccgtcaaatcgatcaagataacc
ctgttcaagccaattcggccgatgcttgccgagcgcatcaggaccgcggaagaagcactt
gagcgcatggagggcaaggctgcagtcgagtacaagctggacggtgagcgcgtgcaacta
cacaagggcaagcagaacgtggaactattttcaaggaggctggaaaagataaccagccac
tacccagacgttgctgaagccatcaagtcgataaaatccgaagtgatactggaaggcgag
gtggttgcgataaacgcggagactggggattatctaccctttcaggaactgatgcaccgc
cggcgcaaatacggtgtagaggaggcgatggagaactatcccgtcgtcatgaactttttt
gacgtgttgtatgtcgacggaaagagcaagacggaactgacctacatggaaagaaggaag
cttctcaaaaagataatcgatgcagtcaaggatgataacaaggtcaggctgatagagcag
acgattgcgaccaagccggaagagatcgaccggttcatggcggctgcgatagaggatggc
tgcgagggagtcatgataaagcagttgtcaagcacgtaccgggcaggcgcaagggagtac
gcgtgggtcaagctaaagcgtgaataccgcagcgaccttgcagacacacttgatctggtg
gtcgtcggcgcgctacacggaaggggcaggcgcacaggcaagtacggcgcgctcctcttg
gctgcatacgaccaaaagacagacatgttccagagcgtcaccaaagtgggcaccggcttt
acggacgtgcaccttgagcagttctacaatgagctcgaaaaacacatcatcaaccagcgt
cacgcccgcgtccagacaggaatggacatggatgtgtggtttgagcccaacatggtgatc
gaggtaattgcttccgagatcacgctcagcccgtcgcacgccgcggcattgaatgcactg
aggcctggctatggtcttgcgctccgctttccaaagttcactgggaaaatccgcgacgac
aaaaagccggaggacgccactgccaccgaggagattgtagagatgtacaggaggcagctg
aaggtggccgggccgtcatatgcagcagaggcagaaggggaagaaggcggctag

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