Nannochloropsis gaditana: NGA_2061700
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Entry
NGA_2061700 CDS
T02917
Symbol
SNRNP40
Name
(RefSeq) Prp8 binding protein
KO
K12857
Prp8 binding protein
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NGA_2061700 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngd03041
]
NGA_2061700 (SNRNP40)
Spliceosome [BR:
ngd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
NGA_2061700 (SNRNP40)
Complex C
U5 SnRNP specific factors
NGA_2061700 (SNRNP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Cytochrom_D1
nos_propeller
Motif
Other DBs
NCBI-GeneID:
17363055
NCBI-ProteinID:
XP_005856286
UniProt:
K8Z322
LinkDB
All DBs
Position
Unknown
AA seq
356 aa
AA seq
DB search
NTLGIYSMDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTG
HAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGCQI
ASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRS
RRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLS
LSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSA
GSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
aatactttaggcatctatagcatggatgaaggccctgaggacgaggcaaggcggactggc
gccgatgatagcgccctggccacggttccggagagttccggcacgctggcaataagcagt
gctcccccagccccaggacggacgtcgcacttggccgcatctaccatgcttttgaccggt
catgctgcagccgtgtattgtctgcagttcaatcccatgggggacgctttggcaacgggg
tcttttgataaaacaatattgctgtgggacgtatatgaggattgtaaaaattacaatgta
ctggctgggcatacgaacgctgtgttggatctgaaatggtcgccaaatggttgccaaatc
gcttcggcatcggccgataagacgctcatgttatgggacagcaacaagggcactcggatc
cgtaaatgcaaggagcacactggatgcgtaaacagtgtggccgtggcgggcgacaaagtc
gcggcgttgatagccacggcaagcgacgatcgcactgtgaagctgtgggacaaccgcagc
cggcgatcggttcaaacaatcgagcatcgctttcagttgctggcggtagcgctgtccgcg
gatgggaaaaaggtgttcgcgggcggcatcgacaacagcatccaggtctgggacatggcc
aagggaccggctcctctagacgtgctcgagggccactcggagacggtcacgggcttgagc
ctgagtcccgacggcaagtatttgctgtcgaacgccatggacaacaccgtgcggcagtgg
gacgtgcggccctttgtgacgggagggcggctggtccaggtcttccaaggagggacacac
ggctcggatcgcaacctcttgcgctgcgcctggtcgcaagacggcgagatggtctctgcg
ggctccgcagatcgcgcggttcatgtatgggatgtgccttcgggtcaggagctctactac
ctgccgggacataaagggaccgtaaatgaggtcgtcttccatccccgggagcctgtgata
gcctctgcgtcttcggacaaaacgtgctatttgggggagcttgccggatga
DBGET
integrated database retrieval system