Novosphingobium ginsenosidimutans: FRF71_12075
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Entry
FRF71_12075 CDS
T06189
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FRF71_12075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_12075
Enzymes [BR:
ngf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
FRF71_12075
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FRF71_12075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QEA16808
UniProt:
A0A5B8S6Q8
LinkDB
All DBs
Position
2446549..2448009
Genome browser
AA seq
486 aa
AA seq
DB search
MTPFRDARIADAFAVPLAAPDDFAGWRGQARRLLMADVPPDRVTWHMPGEGGGDLFASGR
RLPVPRADAPQPRVPRAFLDLAAKAALHRDEGRFALLYRLLWRLQQRPGLMEDEADADVR
QLHRLTRTVRRDMHKMRAFVRFRQIGSGEDERYIAWFEPEHHILRANAEFFVNRFAGMRW
AILTPQGSLHWDGAVLSEGPPASRADAPAQDAAEELWRRYYGSIFNPARLKVGAMLKEMP
RRYWKNLPEAALIPELIAGAQAREAAMVDQGGTMFGEERPGSLPEIAQAIMACRRCPIGC
NGTRAVPGEGQSDPARFGGLIIVGEQPGDSEEEQGRPFVGPAGRLLRAHLEDAGLDLSRA
WLTNAVKHFKFVPKPMRGGGKRRLHQNPTAKEIDICRWWLEGERALLRPRLVLALGASAA
RSLLGKTVSVQQVRGQPMPLDDGSELWITTHPSYLLRLNDGPRAQEEGRFAGDLRAVAAR
LAELAG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgactcccttccgcgacgcccggatcgccgatgcctttgccgtgccgctggccgcgcct
gacgattttgccggctggcgggggcaggcgcggcggttgctgatggccgatgtcccgccg
gaccgggtaacctggcacatgccgggcgagggcgggggtgatctctttgccagcggccga
cgtctgcccgtgccgcgtgccgacgcgccgcagccgcgggtgccgcgggccttcctggac
cttgccgccaaggccgcgctgcaccgcgacgaggggcgctttgccttgctttaccgcttg
ctctggcggttgcagcagcgccctgggctgatggaggacgaggcggatgccgatgtccgc
cagctccaccgcctgacccgaaccgtgcggcgtgacatgcacaagatgcgcgccttcgtc
cgttttcggcagatcggcagcggggaggatgaacggtacatcgcctggttcgagcctgag
catcacatcctgcgcgccaatgcggagttcttcgtgaaccgctttgccgggatgcggtgg
gcgatcctgaccccgcagggttcgctccactgggatggcgcggtgctgtccgaaggtccg
cccgcgtcccgcgccgatgccccggctcaagatgccgccgaagagctgtggcggcgctac
tatggatcgatcttcaatccggcgcggttgaaggttggggccatgctcaaggagatgccc
cgccggtactggaagaacctgcccgaagcggcgctcatccccgagctgatcgccggggcc
caggcacgcgaggcggcgatggtcgatcaaggtggcaccatgtttggcgaggagcgccct
ggttcgctgcccgaaattgcccaggcgatcatggcctgtcgccgctgcccgatcggctgc
aatggaacccgcgccgtgccgggcgaggggcagagcgatcccgcccggtttggcggcctg
ataatcgtcggcgaacagccgggggatagcgaggaagagcagggccggcccttcgtcggc
ccggccggacggctgctgcgcgcgcatctggaggatgccgggctggacctgtcgagggcc
tggctgaccaatgcggtcaagcatttcaaattcgtgcccaagccaatgagggggggcggc
aagcggcggctccaccagaaccctaccgccaaggaaatcgacatctgccgctggtggctg
gagggtgagcgcgccttgctgcgcccgcgcctggtcctggcgctgggggcgagtgcggcg
cgcagcctgctggggaaaaccgtcagcgtccagcaggtgcgcggccagcccatgcccttg
gatgacggcagcgagctgtggatcactacccacccgtcctatctgttgcggcttaacgac
ggcccgcgtgcgcaggaagaaggccgctttgccggcgatctgcgggcggttgcggcgcgg
ctggccgaactggcgggatga
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