Nonomuraea gerenzanensis: LCN96_18550
Help
Entry
LCN96_18550 CDS
T07782
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LCN96_18550 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_18550 (ligD)
Enzymes [BR:
ngn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LCN96_18550 (ligD)
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LCN96_18550 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UBU16942
LinkDB
All DBs
Position
complement(3867989..3868993)
Genome browser
AA seq
334 aa
AA seq
DB search
MVRLPAYAPMLAQLGTLTSVQGDDWAVEMKWDGVRALAYVEDGAVRLMSRNGKDITAAYP
ELQLMAGSTGRHAAVIDGEVVAFDEAGRPSFEALQPRMHQRNPAAVAELTRAVPVTFMAF
DILHLDEAGVVARPYTERRELLEGLLRPGYRWQVPVWFADHASRAFDSSRQLGLEGVVCK
RMSSPYRPGRRSGEWTKIKNVSTVEIVIGGWKPGGGRRSGMIGSLLLGAYDPRGRLRYVG
HVGTGFTESMLRDLRERLASLERDDPPFDEVVPREHARDAHWVEPQVVGEVQYAEVTGDG
RLRHPSWRGLRPDREPREATTAELLPGQGDAAAG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggtgcggctgccggcctacgcgccgatgctggcccagctcgggacgctgacctccgtc
cagggcgacgactgggccgtcgagatgaagtgggacggtgtgcgcgccctcgcctacgtc
gaggacggggccgtccgcctgatgtcgcgcaacggcaaggacatcaccgccgcctacccc
gagctgcagctcatggccggctccaccggcaggcacgcggccgtcatcgacggggaggtg
gtggccttcgacgaggcggggcggcccagcttcgaggcgctgcaaccccggatgcaccag
cgcaacccggccgccgtggcggagctgaccagggcggtgccggtgacgttcatggccttc
gacatcctgcacctggacgaggccggcgtggtcgcgcgcccgtacaccgagcggcgggag
ctgctggaggggctgctgcggcccggctaccggtggcaggtgcccgtctggttcgccgac
cacgcctcgcgggcgttcgactcctcgcggcagctcgggctggaaggggtcgtgtgcaag
cggatgagctcgccgtaccggcccggccggcgcagcggcgagtggaccaagatcaagaac
gtcagtaccgtcgagatcgtcatcggcgggtggaagcccggcggcgggcggcgctcgggg
atgatcgggtcgctgctgctcggcgcgtacgacccgcgcggccggctgcgttacgtcggc
cacgtcggcaccggcttcaccgaatccatgctgcgcgacctgcgcgagcggctggcgtcc
ctggagcgggacgacccgccgttcgacgaggtggtgccgcgcgagcacgcccgcgacgcc
cactgggtggagccgcaggtggtcggcgaggtgcagtacgccgaggtcacgggcgacggg
cggctgcggcacccgtcgtggcgggggctgcggccggaccgcgagccgcgcgaggccacc
accgccgagctgctgcccgggcagggggacgcggctgcgggctga
DBGET
integrated database retrieval system
