KEGG   Naegleria gruberi: NAEGRDRAFT_59468Help
Entry
NAEGRDRAFT_59468  CDS       T01241                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ngr  Naegleria gruberi
Pathway
ngr03030  DNA replication
ngr03410  Base excision repair
ngr03420  Nucleotide excision repair
ngr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NAEGRDRAFT_59468
   03410 Base excision repair
    NAEGRDRAFT_59468
   03420 Nucleotide excision repair
    NAEGRDRAFT_59468
   03430 Mismatch repair
    NAEGRDRAFT_59468
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ngr03032]
    NAEGRDRAFT_59468
   03400 DNA repair and recombination proteins [BR:ngr03400]
    NAEGRDRAFT_59468
Enzymes [BR:ngr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NAEGRDRAFT_59468
    6.5.1.6  DNA ligase (ATP or NAD+)
     NAEGRDRAFT_59468
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NAEGRDRAFT_59468
DNA replication proteins [BR:ngr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    NAEGRDRAFT_59468
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     NAEGRDRAFT_59468
DNA repair and recombination proteins [BR:ngr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NAEGRDRAFT_59468
   NER (nucleotide excision repair)
    Other NER factors
     NAEGRDRAFT_59468
   MMR (mismatch exicision repair)
    Other MMR factors
     NAEGRDRAFT_59468
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase IU_nuc_hydro Presenilin Sec62
Motif
Other DBs
NCBI-GeneID: 8853946
NCBI-ProteinID: XP_002671362
JGI: Naegr1_59468
LinkDB All DBs
AA seq 846 aa AA seqDB search
MRVDIECNSRFCDGRTVCDIYHMTNLPKNVHVTMKMNVSAFWDLLFDCLNQVNNVTVSTR
INETTSRQKLLLKIKKNEKRTIFLDVSFTNLEQSHNYRKNRSFFGSKNSQQTEKRKRNDE
ERKEKVEQSDETKKRKIIDDEIDDETIEEEEEEKTSTLMDTTSYSSDEEEEEDHDEIEEE
NDSVSCKVSTSVKKNSKAPNYEYNSYDPIASATWKTGNRFVFTTLILSKFKSAPYLFLAK
TLDEISKIGSSIKKTELLCNCFRSIIATSPSDLLYSVYLSINKLAPSHFGIELGVGESLI
MKALAEATGKTLKKIKELSVKEGDLGLVANVARSTQKTMFKPKSLTLKSVYDSFKFIATT
EGKKSMNTKVEKIKLLLVSSVDVEPMFIIRSLQGKLRIGLGEETVLIALSHAILLSRGGK
KVLDEADLKFAKETLKSVYSELPSYDDIIPALLEHGFEKLHDICHLKPGFPVRPMLAKSA
KGVQELFDRFGEKEFTCEFKYDGERAQIHMLPDKSIKIFSRNMENHTSKYPDLIQMLPQV
TKEHVKSFIIDCEVVAFDPIEKKIKPFQVLSTRGRKNININDIKVQVCLFAFDILYINGE
SCLKKNLKERRGILHDSFATSDDKFMFASHRDTNDLNDIQVFLEDSIKGNCEGLMVKTLE
VDATYEPSKRSFNWLKLKKDYIEGLGDSVDLVVIGGYKGRGKRTGVYGGFLLACFDPESD
QYQSICKIGTGFSDEMLKECADKMNEHIISAPKSYFSFRESQRPDVWFDANVVWEIKAAD
LTISPAHMAAIGLVDESKGIALRFPRFVRTREDKKPEQATSAEQIADLYNSQAVIAQNKK
PNKNHF
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atgagggttgatattgaatgtaactccaggttttgtgatggaagaactgtgtgtgacatt
tatcacatgacaaatcttccaaagaatgttcatgttactatgaaaatgaatgtgtcagcc
ttttgggatttactttttgattgtttgaatcaagttaacaatgttactgtctcaaccaga
attaatgaaacgacatcgcgccaaaaattgttgttaaaaataaaaaaaaatgaaaaaaga
acaatcttccttgacgtaagtttcacaaatctggagcaaagccataattaccgtaaaaac
agatcattctttggatcaaaaaattcgcaacaaacagagaaaagaaaaagaaacgatgag
gagagaaaagaaaaagttgaacaatccgatgaaacaaaaaaaagaaaaataatagatgat
gaaattgatgacgaaacaatagaagaagaggaggaggaaaaaacctctacattaatggat
actacatcatactcttccgatgaagaagaggaagaagatcatgatgagattgaagaagaa
aatgattcggtttcttgtaaagtttcaacgagtgttaaaaagaattctaaagctccaaac
tatgaatacaactcatacgacccaatcgcctctgcaacctggaagactggaaataggttt
gtttttactactctaattttgtctaaatttaaaagtgcaccatacctttttcttgccaaa
actttagatgaaatttcaaaaattggttcttctatcaaaaaaactgaactgttatgtaat
tgttttagaagtattattgctacatcaccaagtgatttgctttattctgtctatttatct
attaacaaattagcgccttcccactttggtatcgagttgggtgttggtgaaagtttaatt
atgaaagctctagcagaggcaaccggaaagacattgaagaaaatcaaagaattgagtgtt
aaagaaggtgatcttggtctagtggcaaatgtagctagaagtacacaaaaaaccatgttc
aaacctaaatcattaacccttaagagtgtttatgattcgttcaaatttattgccacaaca
gaaggtaagaagagtatgaacacaaaagtagagaagattaaattattgctcgtttcctca
gttgatgttgagccaatgtttatcataaggtccttacaaggtaaattgagaataggactt
ggtgaagagacagtgctaattgctctttcccatgcgattttattgagtaggggtggtaaa
aaagttctagatgaagcagaccttaagtttgctaaggaaactcttaaatctgtctactct
gaacttccaagttatgatgacattataccagctttattagaacatggtttcgaaaagtta
catgatatttgccatttgaaacctggatttccagttcgtccaatgttggctaagagcgca
aaaggtgttcaagaattatttgacaggtttggagaaaaagaatttacctgtgaattcaaa
tatgatggagagagagcccaaatacacatgcttccagataagtctatcaaaattttcagt
agaaatatggaaaaccacaccagcaaatatcctgacttgattcaaatgcttcctcaagtt
actaaagaacatgtcaagagtttcattattgactgtgaggttgttgcctttgatcctatt
gaaaaaaagattaaacctttccaggtactaagcacaagaggaagaaaaaatattaatatt
aatgatatcaaggttcaggtttgtctatttgcctttgatattctgtacattaatggtgag
tcatgcctcaagaagaatcttaaggaaagaagaggaatacttcatgattctttcgctacc
tctgacgataaattcatgtttgcatcccacagagatacaaacgaccttaatgacattcaa
gtgtttttggaagattcaatcaagggtaactgtgaaggtttgatggttaaaactttagag
gtagatgccacttatgaaccctcaaaaaggtctttcaactggttaaagcttaagaaggat
tatattgaagggttaggtgactcggttgacttggtagttatcggaggctacaagggaaga
ggtaaacgtactggtgtttatggtggctttttacttgcatgctttgatccagaatccgac
caataccaatctatatgtaagataggaacaggattttcagacgaaatgctgaaggaatgt
gcagataaaatgaatgaacacataatttctgcaccaaaatcctactttagctttagagaa
agtcaaagacctgatgtatggtttgatgccaatgttgtttgggagattaaggcagctgat
cttaccatttcgcctgctcacatggctgcaataggactagttgatgaatctaaaggtatt
gccctaagatttccaagatttgttagaacaagagaagacaaaaagccagaacaagccacc
tcagcagagcaaatagctgacctttacaattcccaagctgttattgctcaaaacaaaaag
ccaaataaaaaccatttttaa

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