Nocardiopsis gilva: CDO52_20695
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Entry
CDO52_20695 CDS
T05022
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO52_20695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngv03019
]
CDO52_20695
Messenger RNA biogenesis [BR:
ngv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDO52_20695
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF1732
FGase
Motif
Other DBs
NCBI-ProteinID:
ASU84887
UniProt:
A0A223S9T7
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Position
complement(4626779..4628464)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLAKDALRVVALGGLGEIGRNMTVFEYRGKLLIVDCGVLFPEEEQPGV
DLILPDFEYIRDRLDDVEALVLTHGHEDHIGAVPFLLRERADIPLVGSRLTLALISAKLG
EHRIKPVTVQVEEGERRSFGEFDLEFLSVNHSIPDALALAIRTPAGTLLHTGDFKMDQLP
LDGRLTDLAGFARLGDEGVDLLLADSTNAEVPGFVTSERDIAPAIDKVFAQSAQRIIVAC
FASHIHRVQQVLDSAKAHGRKVAFVGRSMVRNMNIARDLGYLTIPGDLLVDVKQLDDLPP
GEAVLVSTGSQGEPMSALTRMANRDHQIRIEEGDTVLLASSLIPGNETSVNRVINGLIRW
GAKVVHKGNALVHVSGHASAGELLYVHNMVRPRNFMPVHGEWRHMREHAKIAALAGLDED
RICIAEDGVVVDLYKGRARITGAVPAGYVYVDGSSVGDVTESALKDRRILGEEGFISVVV
AVDTASGKIVGEPEIHTRGAGLDVEAYDEIIPKLQDSLERAAADGITDPTQLRQLVRRGT
GRWVNENYRRRPMIVPVIVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacccgcaccccgagctcggccctccgccgccgctcgccaaggacgcgctgagg
gtcgtcgccctcgggggccttggcgagatcggccggaacatgacggtcttcgagtaccgc
ggcaagctgctgatcgtcgactgcggcgtgctcttccccgaggaggagcagcccggcgtc
gacctgatcctgccggacttcgagtacatccgggaccggctcgacgacgttgaggccctc
gtcctcacccacggacacgaggaccacatcggcgccgtgccgttcctgctccgtgaacgg
gccgacatcccgctcgtgggttcgcggctgacgctggccctgatctcggccaagctcggc
gagcaccgcatcaaaccggtgaccgtacaggtggaggagggcgaacggcgctcgttcggc
gagttcgacctggagttcctctcggtcaaccactccatccccgacgccttggcccttgcc
atccgcacgcccgcgggcacgctgctgcacacgggcgacttcaagatggaccagctgccg
ctcgacggccgcctgaccgacctggccgggttcgcccggctcggcgacgagggcgtcgac
ctgctgctggccgactccaccaacgccgaggtgccggggttcgtcaccagcgagcgcgac
atcgcgcccgccatcgacaaggtcttcgcccagtccgcccagcgcatcatcgtggcctgc
ttcgcctcgcacatccaccgcgtgcagcaggtcctcgactccgcgaaggcccacggccgc
aaggtcgccttcgtgggccgctcgatggtgcgcaacatgaacatcgcgcgcgacctgggg
tacctgaccatccccggcgacctgctggtcgacgtcaagcagctcgatgacctcccgccc
ggcgaggcggtgctggtctccacgggatcgcagggcgagccgatgtcggcgctgacccgg
atggccaaccgggaccaccagatccgcatcgaggagggcgacaccgtgctgctcgcctcc
tcgctcatcccgggcaacgagacctcggtgaaccgggtcatcaacggcctgatccggtgg
ggcgccaaggtcgtgcacaagggcaacgcgctggtgcacgtctccgggcacgcgtccgca
ggcgagctgctgtacgtgcacaacatggtgcggccgcgcaacttcatgccggtgcacggc
gaatggcggcacatgcgggagcacgccaagatcgccgcgctggccgggctcgacgaggac
cgcatctgcatcgccgaggacggcgtcgtcgttgacctgtacaagggtcgggcgcgcatc
accggcgcggtcccggcggggtacgtctacgtcgacggcagctccgtcggcgacgtcacc
gagtcggcgctcaaggaccgcaggatcctcggcgaggaggggttcatctccgtcgtcgtc
gcggtcgacaccgcatcgggcaagatcgtcggcgagccggagatccacacgcggggcgcg
ggcctcgacgtcgaagcctacgacgagatcatcccgaagctccaggactccctggagcgc
gccgcggccgacggcatcaccgacccgacccagctgcgccagctcgtgcgccgcggtacc
ggacggtgggtcaacgagaactaccgccgtcgtccgatgatcgtgccggtcatcgtcgag
gtctga
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