Nocardiopsis gilva: CDO52_25255
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Entry
CDO52_25255 CDS
T05022
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDO52_25255 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngv03021
]
CDO52_25255 (rpoC)
03400 DNA repair and recombination proteins [BR:
ngv03400
]
CDO52_25255 (rpoC)
Enzymes [BR:
ngv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDO52_25255 (rpoC)
Transcription machinery [BR:
ngv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDO52_25255 (rpoC)
DNA repair and recombination proteins [BR:
ngv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDO52_25255 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CDPS
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
ASU85671
UniProt:
A0A223SBX2
LinkDB
All DBs
Position
complement(5788450..5792325)
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMVTWVDTEARERDMQSLEAHISVERQHLEQRRDSSVEERHRKLEAD
LAELEEQGAKGDARRKVRESAEREMRQIRERVQREIDRLEEVWNRFKNLKVQDLEGDEML
YREMRDRFGKYFRGGMGAQAIQERLANFDLDAEAEKLRETIRSGKGQKKARALKRLKVVA
AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARLLMLATNNILKPSDGKPVTMPTQDMIIGLYYLTTLKENAKGEGR
SFRTPAEAIMAYDNGELDLQAKIQMRLDHDVPPPRGWEAPESLEAGEPYRLETTLGRYLF
NETTPLDYPYVNHQMGKKQISVLVNDLAEGYDKAQVATTLDALKDAGYHWATRSGLTIGI
GDVLAPPGKQEILDGYENQADKIQREYDRGLITDDERRQELTEIWTKATNEVAQVMEDNF
PVDNPVWMMVQSGARGNPMQVRQIAGIRGLVSNTKGETIPRPIKSSYREGLSVLEYFIST
HGQRKGLADTALRTADSGYLTRRLVDVAQDVIVREVDCGTDRSLWQEVGEKNAAGTVVRK
HNVENTGFGRTLAEDVVVNGEIIVPAGGDTSEGNIDKLVAAGIERVRVRSSLTCEAKIGV
CSTCYGRSMATGKAVDVGEAIGIIAAQSIGEPGTQLTMRTFHMGGSAGADITHGLPRVQE
LFEARIPKGVAPISELPGRIRIDDTEKSRKIVLIPDDGSDEIAYPVPMRAQLLVSDGDHV
TVGQQLIAGAINPHEVLRIQGPRAVQQHLVSEVQEVYKSQGVSIHDKHIEIIVRQMLKRV
NILESGDTSLLPGEMVERPKFEAMNREVVAEGGQPAAGRPVLLGITKASLATESWLSAAS
FQETTRVLTENAIHGKSDPLVGLKENVIIGKLIPAGTGLPKYRNIRVEPTEEAKASMYSV
SGYDEPSEYTFGQGSGEAVPLEEYDFGPYNR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaatttcttcgacgagctgcgtattggcctcgcgaccgccgacgacatc
cgccagtggtcgcacggcgaggtcaagaagccggaaaccatcaactaccgaaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggccccacccgcgactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggggtc
gaggtcacccgggcgaaggtccgtcgtgagcgcatgggccacatcgagctcgccgctccg
gtgacccacatctggtacttcaagggcgtgcccagccgcctggggtacctgctcgacctt
gccccgaaggatctcgagaagatcatctacttcgcggcctacatggtcacctgggtcgac
accgaggcgcgtgagcgcgacatgcagtcgctcgaagcgcacatctcggtggagcgccag
cacctggagcagcggcgcgactcctcggtcgaggagcgccaccgcaagctcgaggccgac
ctcgccgagctggaggagcagggcgccaagggcgacgcgcgccgcaaggtgcgcgagtcc
gccgagcgcgagatgcggcagatccgcgagcgcgtgcagcgcgagatcgaccgcctcgaa
gaggtctggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagatgctc
taccgcgagatgcgggaccgcttcgggaagtacttccgcggcggcatgggcgcccaggcc
atccaggagcgcctggccaacttcgacctcgacgccgaggccgagaagctgcgcgagacc
atccgcagcggcaagggccagaagaaggcccgcgccctgaagcggctcaaggtcgtcgcg
gcgttcctcaacacgcggaacagcccgatgggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgaccggtcaccggtccgggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggtcgcttccggcagaacctgctcggtaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgaccctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgttcccgc
cccgtggtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctcaaccgt
gcgcccaccctgcaccgtctgggcatccaggccttcgaaccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcccaggctgaggcgcgcctgctcatgctg
gcgaccaacaacatcctcaagccgtccgacggcaagccggtcaccatgccgacgcaggac
atgatcatcggcctctactacctgaccactctcaaggagaatgcgaagggcgagggccgc
tcgttccgcacgccggccgaggcgatcatggcctacgacaacggcgagctcgacctgcag
gccaagatccagatgcggctcgaccacgatgtcccgccgccgcgcggctgggaggcgccg
gagagcctcgaggccggagagccctaccggctggagaccacgctcggccggtacctcttc
aacgagaccacgccgctcgactacccctacgtcaaccaccagatgggcaagaagcagatc
tcggtcctggtcaacgacctggccgagggctacgacaaggcccaggtcgccacgacgctc
gacgccctgaaggacgccgggtaccactgggcgacccgttcggggctgaccatcggtatc
ggcgacgtcctcgcgcctcccggcaagcaggagatcctggacggctacgagaaccaggcc
gacaagatccagcgggagtacgaccgcggtctgatcaccgacgatgagcgccgccaggag
ctcaccgagatctggaccaaggccaccaacgaggtcgcccaggtcatggaggacaacttc
ccggtcgacaacccggtgtggatgatggtccagtccggggcccgtggtaacccgatgcag
gtccggcagatcgccggtatccgtggtctggtctccaacaccaagggtgagaccatcccg
cgtccgatcaagtcctcctaccgcgagggcctgtccgtgctggagtacttcatctccacg
cacggtcagcggaagggtctggccgacaccgcgctccggaccgccgactccgggtacctc
acccgtcgtctggtggacgtcgcccaggacgtcatcgtccgcgaggtcgactgcggtacg
gaccgctcgctgtggcaggaggtcggtgagaagaacgccgccggcaccgtcgtgcgcaag
cacaacgtcgagaacaccggtttcggccgtacgctcgccgaggacgtcgtggtcaacggc
gagatcatcgtgcccgccgggggcgacacctccgagggcaacatcgacaagctggtcgcg
gccgggatcgagcgggtgcgcgtgcgcagctcgctgacctgtgaggccaagatcggcgtc
tgctcgacctgctacggccgctccatggcgaccggtaaggccgtcgacgtcggcgaggcc
atcggcatcatcgccgcgcagtcgatcggtgagccgggtacccagctgaccatgcggacc
ttccacatgggtggttccgccggtgcggacatcacccacggtctgccccgtgtccaggag
ctcttcgaggcccgcatccccaagggtgtggccccgatctccgagctgccgggccggatc
cggatcgacgacaccgagaagagccggaagatcgtcctgattccggacgacggctccgac
gagatcgcctacccggtgcccatgcgggcgcagctgctggtgagcgacggcgaccacgtc
accgtcggccagcagctgatcgcgggtgcgatcaacccgcacgaggtgctccgcatccag
ggcccgcgcgcggtgcagcagcacctcgtgtcggaggtccaggaggtctacaagtcgcag
ggtgtctcgatccacgacaagcacatcgagatcatcgtgcggcagatgctcaagcgagtg
aacatcctggagtcgggcgacacctcgctgctgcccggcgagatggtggagcgtccgaag
ttcgaggcgatgaaccgcgaggtcgtggccgaaggtggccagcccgcggccggtcgaccg
gttcttctgggcatcaccaaggcctcgctggccacggagtcgtggctgtcggcggcctcc
ttccaggagaccacccgggtgctcaccgagaacgcgattcacggcaagagcgacccgctg
gtcgggctcaaggagaacgtcatcatcggtaagctcatcccggcgggtaccggacttccg
aagtaccgcaacatccgggtggagccgaccgaggaggcgaaggcgtcgatgtactctgtc
tcgggctacgacgagcccagcgagtacaccttcggtcagggatccggtgaggcggttccg
ctggaggagtacgacttcggcccctacaacaggtga
DBGET
integrated database retrieval system
