KEGG   Niabella ginsenosidivorans: A8C56_12060Help
Entry
A8C56_12060       CDS       T04418                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nia  Niabella ginsenosidivorans
Pathway
nia03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A8C56_12060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nia03400]
    A8C56_12060
Enzymes [BR:nia01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A8C56_12060
DNA repair and recombination proteins [BR:nia03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A8C56_12060
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ANH81613
UniProt: A0A1A9I261
LinkDB All DBs
Position
2898014..2900581
Genome map
AA seq 855 aa AA seqDB search
MATLKKYKEKRNFGQTREPKAKIQSARSTQLRFVVQRHAATRLHYDFRLEMEGVLKSWAV
PKGPSMNPADKRLAMMVEDHPYDYRTFEGTIPEGNYGAGEVEIWDEGTYEALQKESRKKE
ETVLLEELKNGSLKFILHGKKLKGEFALVRMKTAQDSNAWLLIKHRDAFATSEKYDAEAL
TAKTSRVTKAVENKKTEKKNPGKKIRINNTVPDLSGTRKYTRYIKPMLASLKKDNQPFSD
KDWVFEIKWDGYRAIAELTDHFRLYSRNGLNFEKRYAPVAEALKKQQHEMILDGEIVAYN
DKGMPNFQALQLYQEQPGTPLVYQVFDLLYLNGHSTELLTLLERKELLKKALKQNDIIKY
CDHVVQDGTRFFKELVKADLEGMIAKKADSTYTEGRRSTEWLKIKYHNIEEVVIAGYTAP
RGSRSKFGALILGRYKEGRLLYAGHTGTGFNEVSLQELFKKMQPLVISKSPFAIAPKTNM
PATWLRPKLVGVIKYSELTKDGIFRHPVFEGLREDKPAKEVVITPNTINMPASKTTPEKQ
ESKPRTAPAAKGNAQDQTVKLNGHEVKLTHQQKIYWPEEGYTKGDLIGYYNNIYRFILPY
LKSRPESMNRFPNGIAGESFYQKDIGASVPDWLHTVPVFSESNQKEIHYVVCNDRASLLY
LANLGCIEFNPWNSTVQKLDFPTYMIIDIDPSEKNNFDQVIDTALAAKQVLDECGAVSYC
KTSGASGMHVHVPLNNQYSYDQVKDFAHLIAIKITELLPDSTTLERNLKKRGNRKIYVDY
LQNRKGQTIASAYSVRPKPGATVSTPLHWKEVKKGLHPAQFTMQTLPKRLEKLGDLFKPV
LGKGINMLKCIEQIR
NT seq 2568 nt NT seq  +upstreamnt  +downstreamnt
atggcaaccctgaagaaatataaagaaaagaggaactttggacagacccgggagcccaaa
gcaaagatacaatcagcccggagcacccagctgcgttttgtagtacagcgccatgcggct
acccggctgcactatgatttccgtctggaaatggagggagtgctcaaaagctgggctgtg
cctaaagggccatctatgaatccggcagacaaacggctggccatgatggtagaagatcat
ccttatgactaccgcacctttgaaggaaccattccggaagggaattatggcgccggcgaa
gtggaaatctgggatgagggcacttatgaagcgttgcagaaagaatcccggaaaaaagag
gagaccgttttactggaagaattaaaaaacggatcgcttaaattcatcctgcatggcaaa
aagctgaagggtgaatttgcactggtacgcatgaaaaccgcacaggacagtaatgcctgg
ctgctgatcaagcacagggatgcattcgctaccagtgaaaaatatgatgcagaagctctt
acggcaaaaacctccagagtaacaaaggcagtcgagaataaaaagactgaaaaaaaaaat
ccaggaaaaaagatccggataaataacacggtaccagatctttccggtacccgtaaatat
acccggtatataaaaccgatgctggccagcctcaaaaaagataaccagcctttttcagat
aaagactgggtctttgagatcaaatgggacggataccgcgccatagcagaactaacggat
cactttcgcctgtattcccgtaacggcctcaactttgaaaaacgctatgcaccggttgca
gaagccttgaaaaagcagcagcatgaaatgatcctggacggagaaattgtagcttataat
gataaaggaatgcccaactttcaggccctgcaactctaccaggaacagcccggtactcct
ttggtgtatcaggtatttgatcttttatatctgaacgggcacagtaccgagttgcttaca
ctgctggaaagaaaagagctgctgaaaaaggcgcttaagcaaaatgatattataaaatac
tgcgatcatgtggtacaggacggaacccgtttttttaaagaactggtgaaggcagatctt
gaaggaatgattgctaaaaaagcagatagtacctatacggaaggaaggcgcagtaccgaa
tggctgaaaataaaatatcataacatagaagaagtagttattgcaggatataccgcaccc
aggggcagccgcagcaaatttggtgctttgatcctgggcaggtataaggaaggccgtctc
ctgtatgccggccataccggaacagggtttaacgaggtctctttacaggaattattcaaa
aaaatgcagcccctggtcatcagtaaatcgccctttgcaattgctccaaagaccaatatg
cccgcaacctggctgcgacccaaactggtaggcgttattaaatattcggaactgaccaag
gatggcattttccggcacccggtctttgaagggctgagggaagataaacctgcgaaagaa
gttgttattaccccaaatacgataaacatgccagcatcaaaaacgactccggaaaaacag
gaaagcaaaccgcgtactgcccctgctgcaaagggaaatgcgcaggatcagacagtaaaa
ctgaacggtcacgaagtaaagctaacccaccagcaaaaaatttactggccggaagagggc
tataccaagggggacctgatcggctactataacaatatataccgttttatactgccctat
cttaaaagcaggccggaaagtatgaaccggttccccaacgggattgccggggaaagcttc
tatcagaaagatataggagcgtcggtaccggattggctgcacacggttcctgtcttttct
gaaagtaatcaaaaagagatccattatgttgtctgtaatgaccgggcttcactattgtac
ctggccaatctggggtgcattgaattcaatccctggaacagcaccgtacaaaaactggac
tttcctacctatatgattattgacatcgacccctcagaaaaaaacaattttgaccaggtc
atcgatacagcacttgctgcaaaacaggtgctggatgaatgcggggctgtatcctattgc
aaaacatcaggtgcttcgggcatgcacgtgcatgtaccactgaataaccaatacagttac
gatcaggtaaaggattttgcacatttaattgccattaagatcacggaattattaccggac
agtaccacactggagcggaacctgaaaaaaagaggcaaccggaaaatatatgttgattat
ttacagaaccggaaaggccaaaccattgccagtgcctatagcgtacgtcccaaaccgggg
gcaacagtttccactcccttacactggaaagaagtaaaaaaaggcctgcatcctgcacaa
tttaccatgcaaaccctgcctaaacggctggaaaagctgggagacctgttcaagccggtt
ttaggcaaaggcatcaatatgctaaaatgcattgaacagatccggtaa

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