Nitrincola iocasae: F5I99_17940
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Entry
F5I99_17940 CDS
T06212
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
nik
Nitrincola iocasae
Pathway
nik03030
DNA replication
nik03410
Base excision repair
nik03420
Nucleotide excision repair
nik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F5I99_17940 (polA)
03410 Base excision repair
F5I99_17940 (polA)
03420 Nucleotide excision repair
F5I99_17940 (polA)
03440 Homologous recombination
F5I99_17940 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nik03032
]
F5I99_17940 (polA)
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_17940 (polA)
Enzymes [BR:
nik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F5I99_17940 (polA)
DNA replication proteins [BR:
nik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F5I99_17940 (polA)
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
F5I99_17940 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F5I99_17940 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
QEW08219
UniProt:
A0A5J6LHZ7
LinkDB
All DBs
Position
complement(3885024..3887756)
Genome browser
AA seq
910 aa
AA seq
DB search
MSEQHLPIILVDGSSYLYRAFFASQQANLSTRDGFPTGAVRVVTSMLRSLLKQYPQSPVT
VIFDAKGKTFRDELFAEYKAHRPSMPDDLRVQVEPIHNIVRAMGIELLVEEGVEADDVIG
TLAREATEKQRPVIISTGDKDMAQLVNEHVTLINTMTDTCMDVAGVKEKFGIPPELVIDL
LALQGDKVDNIPGVPGVGEKTALALLQGIGGIQALYQNLDQIADLPFRGAKSMAAKLEAH
RKEAELSYLLATIKTDVPLHIKLEDIPCPKPDTAALIALFREFEFRSWIEELEAGESVAV
EASQQPVMETDYQVILSWDELESWLARLQTAELFALDTETTSLNYMQAELVGLSFAIKPG
EAAYLPLAHDYVGAPAQLDRNQVLERFKPLLEDPQRPKVGQHIKYDMNVLARYGIKLQGV
VADTMLESYVLNSTAGRHDMDSLADRYLGFKTTSFEEVAGKGKNQLTFNQVDLDIATPYA
AEDADITLRLHQRMTGQLAQEGRLAELLDSLEVPLIPVLAKIERNGARVDATLLSKHSRE
LEIRLKELEQQAFELAGEPFNLGSPKQLQVILFEKQGIPVRKKTPKGAPSTAEEVLQELA
LDYPLPKVIIEHRGLSKLKSTYTDKLPLMINPDTGRIHTSYHQAVTATGRLSSSDPNLQN
IPIRTQEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLLQAFAKGEDIHRATA
AEVFGVELEQVSTEQRRSAKAINFGLIYGMSAFGLARQLGVGRNDAQRYIDHYFATYPGV
QRYMDETRELAHEKGYVETLLGRRLYLPEINSKNGMRRQAAERTAINAPMQGTAADIIKQ
AMLDVDNWLEQSQFDAKMIMQVHDELVFEVAEADVTDFIVRVTQTMEQAVSLKVPLLVEA
DAGLNWDEAH
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacagcatctccctattattctagtcgacggctcctcctatttataccgtgct
ttttttgcctcacagcaggcaaacctgagtactcgggatggctttccgaccggtgccgtt
cgggttgtgacctctatgctgcgtagtttgttgaagcagtatccacagagcccggtcact
gtcatctttgatgccaagggtaaaacctttcgtgatgagctgtttgctgaatacaaagcg
catcgtccttcgatgccggatgatctgcgcgttcaagttgagccgatacacaatattgtc
cgggcgatggggatagagctgctggttgaggagggcgtggaagctgatgatgtgattggc
acgctggcacgtgaagccacagaaaagcagcgtccggtgattatttcgactggcgataag
gatatggcgcagttggtcaatgagcatgtcaccctgatcaataccatgaccgatacctgc
atggacgtggctggggtgaaggaaaaatttggtattcctcctgagttggtgattgatctg
ctagccttacagggcgacaaggtggataacattccaggcgtgccgggcgtgggtgaaaaa
accgcgttggcactgttacagggcatcggcggtattcaagcgctttaccagaatctggat
cagattgccgacctgccatttcgtggcgccaaaagtatggcagcgaagttggaagctcat
cgcaaggaagctgagctatcctatttgctggcgaccatcaagacggatgtgccgctgcat
ataaaactggaagatattccctgtccgaagcccgataccgccgcactaatagcgcttttt
cgtgagtttgagtttcgcagctggattgaagagctggaagctggagagagcgttgctgtg
gaagcgtctcagcagccggtaatggaaaccgattatcaggtgattctgagctgggatgag
ttggaaagttggttagcccgtttgcagacagccgaactgtttgccctggataccgaaacc
accagcctgaattatatgcaagccgagctggttggcttgtcatttgcgattaaacccggt
gaagcggcctacctgccactggcgcatgattatgtgggagccccggctcaactggaccgt
aatcaggtgctggagcgcttcaaaccgctgttggaagatccacagcgacccaaggtaggt
cagcacatcaaatatgatatgaatgtgctggcgcgctatggcatcaagctgcaaggggtt
gtggcggacaccatgctggaatcttatgtgttgaattccacggcaggacggcatgatatg
gatagtctggccgaccgctatctgggctttaaaacaacaagttttgaagaggttgccggt
aagggtaaaaaccagcttacctttaatcaggttgatctcgatattgccacgccctatgcc
gctgaagatgccgatatcaccctgcgcctacatcagaggatgacggggcaactggcgcag
gaaggtcgtcttgccgagttacttgacagcttggaagtgccgctgattccggtgctggca
aagatcgagcgcaatggtgctcgtgtggatgccacgctgctatccaagcacagccgggaa
ttagagatcaggctcaaggagctggagcagcaagcctttgaactggccggtgagcccttt
aatctgggatcacctaaacagcttcaggtgatcttgtttgagaagcaggggattccggta
cgtaaaaaaactcctaaaggagcgccttccacggcagaagaggtgttgcaggagctagcc
ctggactaccctttgcccaaagtgattattgagcatcgtggtttgagtaagctgaaatca
acctataccgataagctgccgctgatgatcaatccggataccgggcgtattcatacctcg
tatcatcaggccgtcactgccactgggcgcttgtcgtcatcggaccccaatctgcagaat
attccgattcggacccaggaaggccggcggattcgccaggcatttattgcgcctgagggc
tatcgtattgtggccgctgactattcccagattgagctgcgtatcatggctcacctgtcg
ggtgacgagggtttgctgcaggcgtttgccaaaggagaggatatccatcgggcaactgcc
gctgaagtctttggtgtcgagctggaacaggtgtctaccgagcagcgtcgcagtgccaaa
gccattaactttgggctgatttatggtatgtcggcctttggtctggcgcgtcagttaggg
gtgggacgtaacgatgcccagcggtatatcgatcactacttcgctacctatccaggtgtg
cagcgttacatggatgaaacgcgggagctggcgcatgaaaagggttatgtggaaaccttg
ctcgggcgtcgtctctatctgccggagattaactcaaaaaatggcatgcgtcgtcaagcg
gctgagcgtacggcgattaatgcgccgatgcagggtacggctgcggacattattaagcag
gcgatgcttgatgtggataactggctggagcagagccagtttgatgcaaaaatgatcatg
caagtacacgatgagttggtgttcgaagttgccgaagccgatgtgaccgactttattgta
cgagttacgcagacgatggagcaggcggtcagccttaaagtgcccttgctagtggaggcg
gatgccggtctgaattgggatgaggcgcattaa
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