Nitrosopumilus adriaticus: NADRNF5_0892
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Entry
NADRNF5_0892 CDS
T03758
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nin
Nitrosopumilus adriaticus
Pathway
nin03030
DNA replication
nin03410
Base excision repair
nin03420
Nucleotide excision repair
nin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NADRNF5_0892 (lig)
03410 Base excision repair
NADRNF5_0892 (lig)
03420 Nucleotide excision repair
NADRNF5_0892 (lig)
03430 Mismatch repair
NADRNF5_0892 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nin03032
]
NADRNF5_0892 (lig)
03400 DNA repair and recombination proteins [BR:
nin03400
]
NADRNF5_0892 (lig)
Enzymes [BR:
nin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NADRNF5_0892 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
NADRNF5_0892 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
NADRNF5_0892 (lig)
DNA replication proteins [BR:
nin03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NADRNF5_0892 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
NADRNF5_0892 (lig)
DNA repair and recombination proteins [BR:
nin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NADRNF5_0892 (lig)
NER (nucleotide excision repair)
Other NER factors
NADRNF5_0892 (lig)
MMR (mismatch excision repair)
Other MMR factors
NADRNF5_0892 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJW70586
UniProt:
A0A0D5C1I5
LinkDB
All DBs
Position
complement(735815..737581)
Genome browser
AA seq
588 aa
AA seq
DB search
MEFSILAEAFYKMESTRKRLELTQFLVELFEKTPHDVIAKIVYLLQGKLRPDFEGVELGV
AEKLAIRAISKSSGSTIKKIEDEYRKGGDLGQAASIIMEQKTQTTFLVEDITIERVYETL
FKIANLEGSRSQDMKMKYISSLLNDANPLEASYILKILLGTLRLGVAENTVMDALAIAFS
GSKENRKSLEHAYSVSSDLGKVAEVIATKGIEGMEKFEIVLFNPIRPMLADRVKSEEEAM
EKMGEEFAAEYKLDGERVQLHIEGDKVVLYSRSLENISSYYPDIIEKIPKAIQADNIILE
AEAVAMNENTGEFLPFQELMHRRRKYKIEKAVTQYPISVNLFDILYCNGKSCLELSYKDR
REKLEKVVKEDEFVKYIPMAIVKNENEVEDFMENSINAGSEGLMLKMLDKPYQAGSRGNY
WLKLKREYQNELGDSLDLVVIGGFFGKGRRTGSYGTLLLATYDEDEDTFPSICKVGTGFS
DESLDQLYQILHPKVTIKKNPRIISEMEADVWFEPELVIEVVASEITLSPIHKAAKDVIR
KGAGLALRFPKFTGKIRVEKAVEDASTNEEVITLYKGQKKVAHDKNLM
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggagttttctattttagctgaagctttttacaaaatggaatcaactagaaaaagatta
gagttgacacaatttctagtagaattgtttgaaaaaactccacatgatgttattgcaaag
attgtttacttgctacaaggaaagttaagaccagattttgaaggtgtagaattaggagta
gctgaaaagctagcaataagggcaatttcaaaatcatcaggaagtacaattaaaaaaatt
gaagacgagtatagaaagggaggagacttgggacaagctgcatcaataataatggagcaa
aaaacacagacaacgtttcttgtagaggacattacaatagaaagagtatatgaaacatta
ttcaagattgcaaacctagaaggttcacgctctcaagacatgaaaatgaaatacatttca
agtctactaaatgatgcaaacccattagaggcaagttacattctgaaaattttgttaggg
acgttaagactgggagttgcagaaaatactgtaatggacgcattggcaatagcattctcg
ggcagtaaagaaaatagaaaaagtttggagcatgcatatagtgtctcaagtgacttggga
aaagttgccgaagtaattgcaacaaaaggaattgagggaatggagaagtttgaaattgtt
ttatttaatccaattaggccaatgcttgcagacagagtaaagagcgaagaagaggcaatg
gagaagatgggagaagaatttgcagcagagtacaagttagacggggaaagggtgcaactc
cacattgagggagacaaagttgtattgtattcaagaagcctagagaatatctcaagctat
tatccagacatcatagagaaaatcccaaaagcaattcaagcagacaatattattttagag
gcagaagctgtagcaatgaatgaaaacactggagagtttcttccttttcaagaattaatg
cacagaagaagaaaatacaaaatagaaaaagcagtaacgcagtatccaatatctgtgaat
ttatttgatattctatattgtaacgggaaaagctgtttggagttgagctacaaagataga
agagagaaattagaaaaagtcgtaaaagaagatgaatttgtcaaatacataccaatggca
attgtgaaaaatgaaaatgaggtcgaagactttatggaaaacagtatcaatgctggaagc
gagggtctaatgctaaaaatgctagacaaaccataccaagcaggctccagaggaaattat
tggctaaaattaaaacgagaataccaaaatgaattaggagacagccttgatctagtagtc
attggtggattttttggtaaaggaagaagaacaggaagttatggaacattacttttggca
acatatgatgaagacgaagatacatttccaagcatctgcaaagtcggaacaggtttttca
gatgaatcactagaccagttatatcaaatattgcatcccaaagttacaatcaaaaaaaac
ccacgcatcattagcgagatggaagcagatgtttggtttgaacccgagcttgtaattgaa
gtagttgcatcagaaattacactgagtccaattcacaaagctgcaaaagatgtgatacga
aaaggtgcaggtcttgcattaagatttccaaagtttacaggaaagattagagttgaaaaa
gcagttgaagatgcatccaccaacgaagaagtgatcacactatacaaaggtcagaaaaaa
gtggcacatgataaaaatttgatgtaa
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