KEGG   Candidatus Nitrosopumilus adriaticus: NADRNF5_0892Help
Entry
NADRNF5_0892      CDS       T03758                                 

Gene name
lig
Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nin  Candidatus Nitrosopumilus adriaticus
Pathway
nin03030  DNA replication
nin03410  Base excision repair
nin03420  Nucleotide excision repair
nin03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NADRNF5_0892 (lig)
   03410 Base excision repair
    NADRNF5_0892 (lig)
   03420 Nucleotide excision repair
    NADRNF5_0892 (lig)
   03430 Mismatch repair
    NADRNF5_0892 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nin03032]
    NADRNF5_0892 (lig)
   03400 DNA repair and recombination proteins [BR:nin03400]
    NADRNF5_0892 (lig)
Enzymes [BR:nin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NADRNF5_0892 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     NADRNF5_0892 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NADRNF5_0892 (lig)
DNA replication proteins [BR:nin03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    NADRNF5_0892 (lig)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     NADRNF5_0892 (lig)
DNA repair and recombination proteins [BR:nin03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NADRNF5_0892 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     NADRNF5_0892 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     NADRNF5_0892 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AJW70586
UniProt: A0A0D5C1I5
LinkDB All DBs
Position
complement(735815..737581)
Genome map
AA seq 588 aa AA seqDB search
MEFSILAEAFYKMESTRKRLELTQFLVELFEKTPHDVIAKIVYLLQGKLRPDFEGVELGV
AEKLAIRAISKSSGSTIKKIEDEYRKGGDLGQAASIIMEQKTQTTFLVEDITIERVYETL
FKIANLEGSRSQDMKMKYISSLLNDANPLEASYILKILLGTLRLGVAENTVMDALAIAFS
GSKENRKSLEHAYSVSSDLGKVAEVIATKGIEGMEKFEIVLFNPIRPMLADRVKSEEEAM
EKMGEEFAAEYKLDGERVQLHIEGDKVVLYSRSLENISSYYPDIIEKIPKAIQADNIILE
AEAVAMNENTGEFLPFQELMHRRRKYKIEKAVTQYPISVNLFDILYCNGKSCLELSYKDR
REKLEKVVKEDEFVKYIPMAIVKNENEVEDFMENSINAGSEGLMLKMLDKPYQAGSRGNY
WLKLKREYQNELGDSLDLVVIGGFFGKGRRTGSYGTLLLATYDEDEDTFPSICKVGTGFS
DESLDQLYQILHPKVTIKKNPRIISEMEADVWFEPELVIEVVASEITLSPIHKAAKDVIR
KGAGLALRFPKFTGKIRVEKAVEDASTNEEVITLYKGQKKVAHDKNLM
NT seq 1767 nt NT seq  +upstreamnt  +downstreamnt
atggagttttctattttagctgaagctttttacaaaatggaatcaactagaaaaagatta
gagttgacacaatttctagtagaattgtttgaaaaaactccacatgatgttattgcaaag
attgtttacttgctacaaggaaagttaagaccagattttgaaggtgtagaattaggagta
gctgaaaagctagcaataagggcaatttcaaaatcatcaggaagtacaattaaaaaaatt
gaagacgagtatagaaagggaggagacttgggacaagctgcatcaataataatggagcaa
aaaacacagacaacgtttcttgtagaggacattacaatagaaagagtatatgaaacatta
ttcaagattgcaaacctagaaggttcacgctctcaagacatgaaaatgaaatacatttca
agtctactaaatgatgcaaacccattagaggcaagttacattctgaaaattttgttaggg
acgttaagactgggagttgcagaaaatactgtaatggacgcattggcaatagcattctcg
ggcagtaaagaaaatagaaaaagtttggagcatgcatatagtgtctcaagtgacttggga
aaagttgccgaagtaattgcaacaaaaggaattgagggaatggagaagtttgaaattgtt
ttatttaatccaattaggccaatgcttgcagacagagtaaagagcgaagaagaggcaatg
gagaagatgggagaagaatttgcagcagagtacaagttagacggggaaagggtgcaactc
cacattgagggagacaaagttgtattgtattcaagaagcctagagaatatctcaagctat
tatccagacatcatagagaaaatcccaaaagcaattcaagcagacaatattattttagag
gcagaagctgtagcaatgaatgaaaacactggagagtttcttccttttcaagaattaatg
cacagaagaagaaaatacaaaatagaaaaagcagtaacgcagtatccaatatctgtgaat
ttatttgatattctatattgtaacgggaaaagctgtttggagttgagctacaaagataga
agagagaaattagaaaaagtcgtaaaagaagatgaatttgtcaaatacataccaatggca
attgtgaaaaatgaaaatgaggtcgaagactttatggaaaacagtatcaatgctggaagc
gagggtctaatgctaaaaatgctagacaaaccataccaagcaggctccagaggaaattat
tggctaaaattaaaacgagaataccaaaatgaattaggagacagccttgatctagtagtc
attggtggattttttggtaaaggaagaagaacaggaagttatggaacattacttttggca
acatatgatgaagacgaagatacatttccaagcatctgcaaagtcggaacaggtttttca
gatgaatcactagaccagttatatcaaatattgcatcccaaagttacaatcaaaaaaaac
ccacgcatcattagcgagatggaagcagatgtttggtttgaacccgagcttgtaattgaa
gtagttgcatcagaaattacactgagtccaattcacaaagctgcaaaagatgtgatacga
aaaggtgcaggtcttgcattaagatttccaaagtttacaggaaagattagagttgaaaaa
gcagttgaagatgcatccaccaacgaagaagtgatcacactatacaaaggtcagaaaaaa
gtggcacatgataaaaatttgatgtaa

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