Candidatus Nitrosopumilus sediminis: NSED_03415
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Entry
NSED_03415 CDS
T02303
Name
(GenBank) triple helix repeat-containing collagen
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
Glycosaminoglycan binding proteins [BR:
nir00536
]
Heparan sulfate/Haparin
Extracellular matrix molecules (General comment) Storage depot, cell adhesion and motility, ECM/barrier formation
NSED_03415
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-ProteinID:
AFS82489
UniProt:
K0BAH4
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Position
complement(569595..571226)
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AA seq
543 aa
AA seq
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MSSQPRLEIQGQAPFKQSGVYEAQIAITDSMPSENAIKTKQFSSLWKDNFHLRVRDGVFS
ETLGSQSNPLPQSIENLDKVWIVVTDLFSSLHSVFDVPLTRSTSKPETKPETKPETKPET
KIISDNQKPKRITKANDGPTGPPGDKGPTGPPGPPGDKGPPGPPGPQGPVGIKGSEGPKG
SPGDKGATGDKGPQGDKGISGDKGITGDKGITGDKGDKGDKGITGPPGDKGEKGPTGPLG
DKGPTGLKGPLGDKGEKGPTGSVGDKGATGLRGVPGEKGDKGPQGPTGDKGLTGSTGPPG
EKGPTGLSGVQGEKGIQGGPGPIGDKGPLGPPGDKGPLGPPGPHGDKGLTGPTGPLGDKG
DKGPLGPMGEKGNKGVEGPIGEKGPQGPQGPAGSKGLTGVPGPQGEKGDKGSIGPIGEKG
QTGPLGPPGDKGPQGPQGSQGERGTTGPPGEKGPQGPQGIQGPQGERGPTGPIGSIGEQG
PVGGQGPVGPAGPRGPPGPPGEKGPSGGMSSEQKAIFKDLLEILTNKNIITTEEQIKLMS
YLY
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatctcagccacgattagagattcaaggacaggcacctttcaagcaatcaggtgtc
tatgaagctcaaattgccattactgatagtatgccctctgagaatgcaattaaaacaaaa
caattctcatctttatggaaggataattttcatcttcgagtaagagatggagtattttct
gaaactctcggttctcaatcaaaccctctcccacaatcaattgaaaatcttgataaagtt
tggattgttgtaactgatttattttcatcattgcatagtgtttttgatgtacctctaact
agatcaacatcaaaacctgaaacaaaacctgaaacaaaacctgaaacaaaacctgaaaca
aaaattatttctgataatcaaaaacctaaacgcattacaaaagcaaacgatggtccaaca
ggacctcctggcgacaaaggaccaacaggacctccaggacctcctggcgacaaaggacct
ccaggacctcctggaccgcaaggacctgttggaattaaaggatccgaaggaccaaaaggt
tctcctggcgacaagggagcaactggtgataaaggtccacaaggtgacaaaggaatttct
ggtgacaaaggaattactggtgacaaaggaattactggagataaaggtgacaagggtgac
aaaggaatcacaggaccgcccggtgacaaaggagaaaaaggtccgacaggtccgcttggt
gacaaaggtccaacaggactaaaaggtccgcttggtgacaaaggagaaaaaggtccaact
ggttctgttggtgataaaggagcaactggattaagaggtgtccctggagaaaaaggtgac
aaaggtccacaaggtccaactggtgataaaggattaacaggttcaacaggaccgcccgga
gaaaaaggtccaactggattatctggtgttcaaggagaaaaaggaattcaaggtggtcct
ggtcctattggtgacaaaggtccattaggaccgcccggtgacaaaggcccattaggtcca
cctggcccacatggtgataaaggattaacaggtccaacaggtccgcttggtgacaaaggt
gacaaaggtccacttggtccaatgggcgaaaaaggaaacaaaggagttgaaggtcctatt
ggagaaaaaggtccacaaggtccacagggaccagctggttctaaaggattaacaggagtt
ccaggtcctcaaggagaaaaaggtgacaaaggttccataggccctattggagaaaaaggg
caaacaggcccattaggtcctcctggtgacaaaggtccacaaggtccacaaggttctcaa
ggtgaacgtggaacaactggtccacccggagaaaaaggtccacaaggtcctcaaggaatt
caaggtcctcaaggtgaacgtggtcctactggccctattggttcaattggtgaacagggt
cctgttggaggacaaggccccgtaggtcctgcaggtccgagaggtccacctggtccaccc
ggagaaaaaggtccttctggaggaatgtcttctgaacaaaaagctattttcaaagatttg
ttagaaatcttaactaacaaaaatataatcactactgaagaacaaatcaaactaatgagt
tatctttactga
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