KEGG   Candidatus Nitrosopumilus sediminis: NSED_03415
Entry
NSED_03415        CDS       T02303                                 
Name
(GenBank) triple helix repeat-containing collagen
Organism
nir  Candidatus Nitrosopumilus sediminis
Brite
Glycosaminoglycan binding proteins [BR:nir00536]
 Heparan sulfate/Haparin
  Extracellular matrix molecules (General comment) Storage depot, cell adhesion and motility, ECM/barrier formation
   NSED_03415
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-ProteinID: AFS82489
UniProt: K0BAH4
LinkDB
Position
complement(569595..571226)
AA seq 543 aa
MSSQPRLEIQGQAPFKQSGVYEAQIAITDSMPSENAIKTKQFSSLWKDNFHLRVRDGVFS
ETLGSQSNPLPQSIENLDKVWIVVTDLFSSLHSVFDVPLTRSTSKPETKPETKPETKPET
KIISDNQKPKRITKANDGPTGPPGDKGPTGPPGPPGDKGPPGPPGPQGPVGIKGSEGPKG
SPGDKGATGDKGPQGDKGISGDKGITGDKGITGDKGDKGDKGITGPPGDKGEKGPTGPLG
DKGPTGLKGPLGDKGEKGPTGSVGDKGATGLRGVPGEKGDKGPQGPTGDKGLTGSTGPPG
EKGPTGLSGVQGEKGIQGGPGPIGDKGPLGPPGDKGPLGPPGPHGDKGLTGPTGPLGDKG
DKGPLGPMGEKGNKGVEGPIGEKGPQGPQGPAGSKGLTGVPGPQGEKGDKGSIGPIGEKG
QTGPLGPPGDKGPQGPQGSQGERGTTGPPGEKGPQGPQGIQGPQGERGPTGPIGSIGEQG
PVGGQGPVGPAGPRGPPGPPGEKGPSGGMSSEQKAIFKDLLEILTNKNIITTEEQIKLMS
YLY
NT seq 1632 nt   +upstreamnt  +downstreamnt
gtgtcatctcagccacgattagagattcaaggacaggcacctttcaagcaatcaggtgtc
tatgaagctcaaattgccattactgatagtatgccctctgagaatgcaattaaaacaaaa
caattctcatctttatggaaggataattttcatcttcgagtaagagatggagtattttct
gaaactctcggttctcaatcaaaccctctcccacaatcaattgaaaatcttgataaagtt
tggattgttgtaactgatttattttcatcattgcatagtgtttttgatgtacctctaact
agatcaacatcaaaacctgaaacaaaacctgaaacaaaacctgaaacaaaacctgaaaca
aaaattatttctgataatcaaaaacctaaacgcattacaaaagcaaacgatggtccaaca
ggacctcctggcgacaaaggaccaacaggacctccaggacctcctggcgacaaaggacct
ccaggacctcctggaccgcaaggacctgttggaattaaaggatccgaaggaccaaaaggt
tctcctggcgacaagggagcaactggtgataaaggtccacaaggtgacaaaggaatttct
ggtgacaaaggaattactggtgacaaaggaattactggagataaaggtgacaagggtgac
aaaggaatcacaggaccgcccggtgacaaaggagaaaaaggtccgacaggtccgcttggt
gacaaaggtccaacaggactaaaaggtccgcttggtgacaaaggagaaaaaggtccaact
ggttctgttggtgataaaggagcaactggattaagaggtgtccctggagaaaaaggtgac
aaaggtccacaaggtccaactggtgataaaggattaacaggttcaacaggaccgcccgga
gaaaaaggtccaactggattatctggtgttcaaggagaaaaaggaattcaaggtggtcct
ggtcctattggtgacaaaggtccattaggaccgcccggtgacaaaggcccattaggtcca
cctggcccacatggtgataaaggattaacaggtccaacaggtccgcttggtgacaaaggt
gacaaaggtccacttggtccaatgggcgaaaaaggaaacaaaggagttgaaggtcctatt
ggagaaaaaggtccacaaggtccacagggaccagctggttctaaaggattaacaggagtt
ccaggtcctcaaggagaaaaaggtgacaaaggttccataggccctattggagaaaaaggg
caaacaggcccattaggtcctcctggtgacaaaggtccacaaggtccacaaggttctcaa
ggtgaacgtggaacaactggtccacccggagaaaaaggtccacaaggtcctcaaggaatt
caaggtcctcaaggtgaacgtggtcctactggccctattggttcaattggtgaacagggt
cctgttggaggacaaggccccgtaggtcctgcaggtccgagaggtccacctggtccaccc
ggagaaaaaggtccttctggaggaatgtcttctgaacaaaaagctattttcaaagatttg
ttagaaatcttaactaacaaaaatataatcactactgaagaacaaatcaaactaatgagt
tatctttactga

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