Nitrospira japonica: NSJP_3437
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Entry
NSJP_3437 CDS
T05001
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nja
Nitrospira japonica
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nja03016
]
NSJP_3437 (rnd)
Enzymes [BR:
nja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NSJP_3437 (rnd)
Transfer RNA biogenesis [BR:
nja03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NSJP_3437 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
GASH
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
SLM49604
UniProt:
A0A1W1I9B5
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All DBs
Position
I:complement(3292225..3293436)
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AA seq
403 aa
AA seq
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MNQSVTTPSEPVYITTRADLERLCHQLQASAELALDTEFVGEESFVPKLELIQIASSGLS
AVIDFPAVQADGPLDMFWELIGNPGVNKIVHAGRQDLDLFAVHAGEIPKPFFDTQIAAAM
LGFGAQSAYANLVQRIVGTRLAKAHTFTNWSARPLSHDQIAYAAEDVQFLLPIHAHLVRK
LSALGRLEWAHEEFARLESVVGEKGRDPLERYQRIRGWEGLKPKYAAVLRDLAAWRESEA
KRRNVPRGRVLRDEVLLQLARHPPRTVNELKTLRGVHSSEVERNGEHIVKTVERSLALPP
SAWPQVPVERRSEPESVGVVEFLQAVLKARAAEAEIAPTLLATSADIQALVEAREKKSEI
ALPLLRGWRREVAGNLIQQVLNGEVTVRVSRSGTLLFKPDGTG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagagcgtgaccacaccaagcgagcccgtttacatcaccacgcgcgcggatctc
gaacggctatgccaccagctgcaggccagcgcggagcttgccctcgacaccgagttcgtc
ggggaagagagtttcgttcccaagctcgaactcattcagatcgcctcgtccgggctttcg
gcggtcatcgactttcccgccgtgcaggccgacggtccgctcgacatgttctgggaactc
atcggcaatccgggagtgaacaagatcgtccatgccggccggcaggatttggatctgttc
gcggtgcatgccggagagattccgaagccgtttttcgatacgcagattgccgccgcaatg
ttgggattcggcgctcaatctgcgtatgcgaatctggtgcagcgcatcgtcggcaccagg
ctcgcgaaggcccacaccttcaccaactggagtgcgcgcccgctttcgcacgatcagatc
gcctacgcggccgaggacgttcagttccttcttccgattcatgcgcatctcgtcaggaag
ctttcggcgttgggccgattggaatgggcccacgaagagttcgcccgactggagtcggtc
gtgggtgagaagggccgggatccgcttgaacgctatcagcgaatcaggggctgggaaggg
ctcaagcccaagtacgccgccgtgcttcgtgatctggccgcctggcgtgaaagcgaggcc
aagcgccgcaatgtaccgcggggacgggtactgagggatgaagtcctgttgcaattggcc
cggcatccgccgaggaccgtgaatgaactcaagaccctcagaggagtccacagttccgag
gtcgaacgtaacggcgaacacattgtaaaaacggtggaacgctcactggccctgcctccc
tcggcgtggccgcaagtgccggtggaaaggcgatctgaacctgagtccgtcggggtcgtc
gagtttcttcaagccgtcctaaaggcccgtgcggcggaagcggaaatcgctccgaccttg
cttgcgaccagtgccgacattcaagcattggtcgaggccagggagaaaaagagcgaaatc
gctcttcctctcttgcgcggatggcgtcgggaagtggcgggaaatttgatccagcaagtg
ttgaacggcgaggtaacggtgcgggtgagtcgctcggggactttgttgttcaagccggat
ggtacgggatga
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