KEGG   Nitrosospira lacus: EBAPG3_007500Help
Entry
EBAPG3_007500     CDS       T04907                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nlc  Nitrosospira lacus
Pathway
nlc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nlc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EBAPG3_007500 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nlc03400]
    EBAPG3_007500 (ligD)
Enzymes [BR:nlc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EBAPG3_007500 (ligD)
DNA repair and recombination proteins [BR:nlc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EBAPG3_007500 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ARO89059
UniProt: A0A1W6STE2
LinkDB All DBs
Position
1689733..1692276
Genome map
AA seq 847 aa AA seqDB search
MALRNSLKAYREKRNFSITPEPDEMGKDAEANDAALSFVVQKHWATRLHYDFRLELDGTM
KSWAIPKGPSFDPHDKRMAIHVEDHPISYNRFEGRIPAGQYGAGKVIIWDKGTWVPLQDP
RNGYRDGKLKFELRGYKLKGHWTLVRMKNREENKQEPWLLIKEKDEYVRSSSEYSVVDEL
PDSVAGLESRHLNKTARSSASAREKHNRAVGLPEKAVEADLPSTLQPELAILVDELPAHP
ADWLYEIKFDGYRILCRVGDGKIQLFTRNGNDWSHKLPDLVKALGKMDLKPGWLDGEIVV
PGEKGIPDFQALQNAFDSSRTQGILYYLFDIPFYDGYDLRDVPLIERRAFLKTFFEKSPP
DPVRFSETFDAPARDIVASACRMGLEGVIGKRKTSTYVSRRSSDWVKLKCGRRQEFVIGG
YTDPQGSRIGLGSLLLGVYDEDKKLRYAGNVGTGFSDKTLHDLEARLKKIVASRSPFHEA
SGIDGKAHWVLPLLVAEISFGEWTRDGRIRHSVFHGLRTDKKAEAVTREKPMHPMTEKPT
IMTSIPASLRVTHPERIIDPSSGFTKMELIRYYSLIAPLMLEHLKGRPVSLVRAPDGITG
QLFFQKHWEKEKMQGVNQLDPALDPGHEPLLEISTAEGLLSAAQMNVIEFHTWNATKNAI
DKPDRMTFDLDPGEGVTWKLVQESAQLVRVFLDELGLRSFLKTSGGKGLHVAVPIKRLLD
WDTVKDFSQAIVQHLARTIPQRFVSKSGAQNRVGKVFIDYLRNGFGATTVCAWSVRARQG
LGVSVPLAWEELESLASASHWSASNIHERLDKGNEPWADYGATKQSILPAMKIFGFKPGK
ETSRQVK
NT seq 2544 nt NT seq  +upstreamnt  +downstreamnt
atggcgctgcggaattcactcaaagcctaccgggaaaaacgtaatttctcgataacaccc
gagccggatgaaatgggcaaggatgctgaggcaaacgacgcggcgttgtcgtttgtggtg
cagaaacactgggcgacccggctgcattacgacttcaggctggagcttgatggaacaatg
aaaagctgggccattcccaagggccccagctttgatccccacgacaagcgcatggcaatt
catgtcgaggatcatcccatttcctacaatcgtttcgaaggccggattccagccggacag
tatggggcgggcaaggttatcatctgggacaagggaacgtgggttcctctgcaggatccc
cgcaacggctatcgcgatggcaagttgaaatttgaactgcgcgggtacaaactcaagggc
cactggacgctggttcgcatgaaaaaccgggaggagaacaagcaggagccgtggctgctt
atcaaggagaaggatgagtatgttcgttcatcaagcgagtacagcgttgtggatgaactg
cccgatagcgttgccggactcgaatcccgccatttaaacaaaacagccaggtcatcggcc
agcgcaagagaaaaacacaaccgtgccgtcgggttgcccgagaaagcggttgaagctgat
cttccttcaaccctgcaacccgagcttgcaatccttgtagatgaactgcccgctcatcca
gccgactggttatacgaaatcaagtttgatggttatcgaatcctttgcagggtcggggac
gggaagattcagctattcacgcgtaacggtaacgattggtctcacaagctgcctgacctg
gtgaaggcattaggcaaaatggaccttaaaccggggtggctggatggtgaaattgtggtg
cccggcgagaagggcattccagactttcaggccttgcagaatgccttcgatagttcccgg
acgcagggtatcctatactatctgttcgatatcccgttttatgacggatacgatttgagg
gacgttcccctcatcgaacggcgtgcgtttctgaaaacattctttgagaaatcgcccccg
gacccggtgcgcttcagcgagacatttgatgcccccgcccgggatatcgttgcgtcggct
tgccgcatgggactggaaggcgtcatcggtaaacgcaagacctcgacgtatgtctcacgc
cgctcctctgattgggtaaagctcaagtgcggccggcgccaggaattcgtgatcggcggc
tacacggatccacaaggctcccgcataggcttgggttcgcttttgctcggcgtttacgat
gaagacaaaaagctccggtacgccggcaatgtgggtacgggctttagcgataagactctt
cacgatcttgaagcgaggttgaaaaaaatcgtggcgtcacggagtcctttccatgaagcg
tccggcatcgatgggaaagcccattgggtgctgccgctactggttgcggaaatttccttc
ggcgaatggactcgggacggccggatacgtcactcggtttttcatggtttgcgcaccgat
aagaaagcggaggctgtcacgcgggagaaacccatgcatccaatgacggaaaaacccacg
ataatgacctcaattcctgcctcgctgcgagtcacccatcccgaacgcataatcgatcct
tccagcggcttcaccaagatggaactcatacgctactattcattgattgctcccttgatg
ctggagcatcttaaaggaaggccggtatcattggtgcgcgcgccggatggcattacaggc
cagttatttttccagaagcattgggaaaaagagaaaatgcagggggtgaatcagctcgat
ccggcactcgatcccgggcatgagccattgcttgaaatatcgacggctgaaggtctgctg
tccgccgctcaaatgaacgtgatcgaatttcacacctggaatgccacaaagaatgctatc
gacaaacctgatcgaatgacgttcgatctcgatcccggcgaaggagtgacgtggaagctt
gtccaggaatcagcacagcttgtgcgtgtatttcttgacgaattgggattgaggtctttt
cttaaaaccagcggcggaaagggtttgcatgttgctgttccaatcaaaaggttactcgac
tgggacacggtgaaagatttttctcaagcgattgttcagcatcttgccaggaccattccg
cagcgtttcgtgtcaaaaagcggagcgcagaatcgtgtgggaaaggtcttcattgattat
ttgcgcaacggctttggcgcaaccaccgtgtgcgcctggtcagttcgcgcccgtcagggt
ttgggcgtctccgtgcccctcgcgtgggaagaactggagtcgcttgcgagcgccagccac
tggtcggcctcgaatattcatgagcgcctggacaaaggcaatgagccttgggcagattat
ggcgctacaaagcagtcgatactgccggcgatgaaaatatttggattcaaacccggcaaa
gagacatcccgtcaagtcaagtga

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