Nipponia nippon (crested ibis): 104009697
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Entry
104009697 CDS
T05756
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03015
mRNA surveillance pathway
nni04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104009697 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
104009697 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nni03021
]
104009697 (SYMPK)
03019 Messenger RNA biogenesis [BR:
nni03019
]
104009697 (SYMPK)
Transcription machinery [BR:
nni03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104009697 (SYMPK)
Messenger RNA biogenesis [BR:
nni03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104009697 (SYMPK)
U7-dependent histone pre-mRNA processing factors
104009697 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
104009697
NCBI-ProteinID:
XP_009459986
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MLLKDENVNVVKKAILTMTQLYKVALQWMVKSKVISELQEACWEMMAAMANDIILLLDSD
NDGIRTHAIKFVEGLIITLSPRMADSDVPKRHENDISLERIPKDHPYIKYNVLWEEGKAA
LEQLLKFMVHPAISSINLTAALGSLATIARQRPMFMAEVIQAYETLHANLPPTLAKSQVS
SVRKNLKLHLLSVLRHPSSGDFQPQITTLLVDLGTQQAEIARSMPSPRDARKRPRDEPDA
ALKKMKIGVEQTKHLKEEPKEEKTAKPESVVIKRRLSALAQGQAISVLGAQGSAANLLEE
EAPQAKRRPEPIIPAXXXXXXXXXXRKKVFRLSDVLKPLSDAQMEKLKLSAVKRILRAER
AVACSGAAQARVKILASLVTQFEVPLKSEVLAFILDDVRGRLDLAFAWLFQEYNAYLSRF
PAGNLERYDECLIGLLAGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYL
GMSTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRQQALLFIKRMYEKDQLREYVEKFAL
NYLQLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTE
AIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELV
KRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGT
SAVSPLNPGELLIALHNIDSSKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPL
PMLLMRTVIQALTMYPRLGGFVMNILSRLIMKQVRPAVRLSVPPSVWPAVWPPIWPHGAG
GSVVCLSLGGGLRAWAVCPVLVSAGVCPVLVCLWASVCPVLVSAGVRPVLVCLWASVCPV
LVSAGTVTLGMVTVTPGPPGATR
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgaaggacgagaacgtcaacgtggtgaagaaggccatcctcaccatgacccag
ctctacaaggtggccctgcagtggatggtgaaatccaaagtgatcagcgagttgcaggaa
gcttgttgggagatgatggcggccatggccaacgacatcatcctcctcctcgattcggat
aacgacggcatccgcacccacgccatcaagttcgtggaagggctcatcatcaccctgtcc
ccccgcatggccgactccgacgtccccaaacgtcacgagaacgacatcagcttggagcgc
atccctaaggatcatccttacatcaaatacaacgtcctgtgggaggagggcaaggccgcc
ctggagcagctcctcaagttcatggttcacccggccatctccagcatcaacctgacggcc
gccttgggttccttggccaccatcgctcgccaacggcccatgttcatggccgaggtcatc
caagcctacgagacccttcacgccaaccttcctcccaccttggccaagtcgcaggtcagc
agcgtccgtaagaacctgaagcttcacctcctcagcgtcctccggcacccgtcctccggc
gacttccaaccccagatcaccaccctcctcgtcgacctgggcacccaacaggccgagatc
gcccgcagcatgcccagcccccgcgacgcccgcaagcggccccgtgacgagcccgacgcc
gccctcaagaagatgaagatcggcgtggagcaaaccaaacacctgaaggaggaaccgaaa
gaggagaaaacggccaaaccggagagcgtggtgatcaaacggcggctctcggcgctagcc
cagggccaggccatctcggtcctgggtgcccaaggctcggccgccaacctgctggaggaa
gaagccccccaagccaaacgtcgccccgagcccatcatcccggcnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnncgtaagaaggttttccgcctgagcgacgtcctcaagccgctgagc
gacgcgcagatggagaagctgaagctgagcgccgtcaagcgcatcctgcgcgccgagcgc
gccgtcgcctgcagcggggccgcccaggcccgcgtgaagatcttggcttcgctggtgacg
cagttcgaggtgccgctgaagagcgaggtgttggccttcatcctcgacgacgtccgtggc
cgcttggatttggccttcgcctggcttttccaggaatacaacgcctacctgagccgattc
cccgccggcaacctggaacgctacgacgagtgtctcatcgggctcctcgccggcctccag
gagaagccggatcagaaggacgggattttcaccaaagtggtgctggaagcgccgctgatc
accgagagcgcgttggaggtcatccgcaagtactgcgaggacgagagccgcacctacctg
ggcatgtcgacgctgcgcgacctcatcttcaagcgaccgtcgcgccagttccagtacctc
cacgtcctgctggacctcagctcccacgagaaggacaaggtccgccagcaggccctgctc
ttcatcaaacgcatgtacgagaaggatcagctccgggagtacgtggagaagttcgccctc
aactacctgcagctcttggtgcaccccaacccgccctccgtcctcttcggggccgacaag
gacaccgaggtggcggcgccgtggacggaggagaccatcaagcagtgcctctacctctac
ctggcgctgctgccccacaaccataagctcatccacgagttggcgtccgtctacaccgag
gccatcgccgacatcaagcgcaccgtcctgcgcgtcatcgagcaaccgatccgcgggatg
gggatgaactcgcccgagttgttgctgctggtggagaactgccccaagggagccgagacg
ttggtgacgcgctgcctgcacagcctgacggacaaagtgccaccgtcgcccgagctggtg
aagagggtccgcgacctctatcacaagcggctgccggacgtcaggttcctcatccccgtc
ctcaacgggctggagaagaaagaggtgatccaggcgttgcccaaactcatcaagctcaac
cccatcgtggtcaaggaggtcttcaaccgcctgctggggacgcagcacggtgacggcacc
tcggccgtgtccccgctgaacccgggggagctgctgatcgccctccacaacatcgactcc
tccaagtgcgacatgaagtccatcatcaaagccaccaacctgtgcttcgccgagcgcaac
gtctacacctcggaggtgctggcggtggtgatgcagcagctgatggagcagagccccctc
cccatgctgctgatgcgcaccgtcatccaggccctcaccatgtacccccgcctcggcggc
ttcgtcatgaacatcctctcccgcctcatcatgaagcaggtccggccggccgtccgtctg
tccgtcccgccgtctgtctggccggccgtctggccgcccatctggccccatggggcgggg
gggtcggtggtgtgcttgtccctgggtgggggccttagagcgtgggccgtctgtcctgtc
ctggtgtccgcgggtgtctgtcctgtcctggtgtgcctctgggcgtccgtctgtcctgtc
ctggtgtccgcgggtgtccgtcctgtcctggtgtgcctctgggcgtccgtctgtcctgtc
ctggtgtccgcggggacggtgacactggggatggtaacggtgaccccaggccccccaggt
gccacccgctga
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integrated database retrieval system
