KEGG   Nipponia nippon (crested ibis): 104017341Help
Entry
104017341         CDS       T05756                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    104017341 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nni03400]
    104017341 (LIG4)
Enzymes [BR:nni01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104017341 (LIG4)
DNA repair and recombination proteins [BR:nni03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     104017341 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme Tox-REase-9 LIG3_BRCT SKA1
Motif
Other DBs
NCBI-GeneID: 104017341
NCBI-ProteinID: XP_009468640
UniProt: A0A091UKW0
LinkDB All DBs
Position
Unknown
AA seq 912 aa AA seqDB search
MASAPASQPPSRKTVASHVPFADLCSTLERIQRCKSRPEKTKYFKDFLDSWRRFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPTVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNNQKLGHEVLSKRYEILSSVFTPVTGRIHVVRKKNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSNVSKV
SNIFEDVEFCVMTGMGKYSKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRIKDDEVVPLDVIAELEERYSWNTCQLSIFRGNTIYVDCYAVVNEPRTKIHGTTLS
IRALELRFYGAKVVSHLEEGISHVVIGEDHSRVKEIKTLRRTFGKKFKILSELWVTESVE
EGVPKNENQYLI
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgcacctgcttcgcagccgccttctagaaaaacagtggcctctcatgtccct
tttgcagatctgtgttctactctggagcgaatacagaggtgtaaatctcgtccagagaaa
accaagtatttcaaggatttcctggattcctggagaagattccacgatgctcttcatcaa
aaagagaaggatgtcacagattctttttatccagctatgcggcttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttgaattacagaacacct
gctggctcacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaaccg
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacctagatgctata
gctaataataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggctcattcggatgattataaaggatctaaag
cttggtgttagtcagcaaactatattttccatttttcatcctgatgctgttgaattacac
aacgtcacaactgatttggaaaaagtttgcagacaactgcatgatcccactgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggagatgtctataaatatttttcccgaaatggg
tttgactatacacagcagttcggtgcttccccccttgatggttcattaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcccgaggcgcaaacctttatgcaaaaaggaaacaaatttgacattaaaagaatggtg
gaggactctgacctgcagacatgcttctgtgtgtttgatgtgttgatggtcaacaatcag
aagttgggtcatgaagtactaagcaaaagatacgaaatcttaagtagcgtatttacccca
gtaacgggcaggatacatgttgtacgtaaaaaaaatgccagaacgagaaaagaagtaatc
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtc
aatgggctgatggatgaactggaccttttaattgttggtggttactggggaaagggctca
cgtggtggaatgatgtctcattttctgtgcgctattgcagagacgccccctccaaatgaa
aaacctacagttttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tatgacttaggcttgaaactggctaaacactggaagccctaccataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagccgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattccctcgaattgagaagataagagaggacaaagaatggtacgagtgcatgact
tcagacatgttagaagatctcagaagcaaagcagaagggaagctggcatctaagcacctt
catatagatgagtatgatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtt
tcaaatatatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tctgaactggaaagcagaatagctgaatgtggtggcagcgtggtgcagaacccagggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctccagacacaaaagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaataaaagacgatgaggtggtgcctttggacgtgattgcagagtta
gaagaacgttattcatggaacacttgtcagctcagtatattcagaggaaacactatttat
gtggactgttacgctgttgttaatgagcccagaacgaaaatccatggaacaacactatca
attagagctttggagctccgcttttatggtgcaaaagtagtctctcaccttgaagagggc
atctcccatgttgttataggagaagatcattcccgggtaaaagagattaaaacactcagg
agaacatttgggaaaaaatttaaaattttatctgagctgtgggtaacagagtcagtggag
gaaggagtcccaaagaatgaaaatcagtacttaatttaa

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