Nitrosococcus oceani: Noc_0045
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Entry
Noc_0045 CDS
T00281
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
noc
Nitrosococcus oceani
Pathway
noc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Noc_0045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noc03021
]
Noc_0045
Transcription machinery [BR:
noc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Noc_0045
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ABA56587
UniProt:
Q3JF09
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All DBs
Position
43212..45020
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AA seq
602 aa
AA seq
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MLKIMEQDRQSQLKLLIARGKDRGYLSYSEVNDHLPDDVIDPEQIEDIITMFNDMGISVH
EDMAEADALAIMDTAVADDEVAEEAAAALVSVDGEFARTSDPVRMYMREMGSVELLTREG
EISIAKRIEEGMRQVYTALSRFPGSVAELLCQYEKVEADEIRLADVISGFQESEEADLKE
SAAEEASVSSEGSTEEEESDNGLDLDRVREQFTQLRELYERYQAADLKDNDRALAELSEC
FLQLKLVPRLSQRLIENLRGVVAEIRVLERSIMKIAVNSAQMPRKDFLSSFQKQETNLNW
VEKHIRAKKHYSSVLRKQGDAIQKAQEKLIVLEQRAGMSITQIKEINRSLSIGEARARRA
KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
RQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPDELAERVEMPKDKVR
KVLKIAREPISMETPIGDDEDSHLGDFVEDAAVISPPDSAIFSGLRETTQLILAGLTPRE
AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDIEN
NN
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaattatggaacaagatcgtcagtcacaattgaaacttttgatcgcaaggggt
aaggatcggggttatctatcctatagcgaggtaaacgatcacctgcccgacgacgtgatc
gatccggagcaaattgaagacattattacaatgttcaacgatatgggtatctccgtgcat
gaggatatggcggaagccgatgccctagcaattatggataccgccgttgccgacgatgag
gtggctgaggaggctgctgctgctctggtctcggtggatggagagtttgcccgaacttcg
gatccggtccgtatgtatatgcgggaaatgggcagcgttgagcttttgactcgggaaggg
gagatcagcatcgctaagcgaatcgaagagggaatgcggcaagtttataccgctctttct
cgttttccaggcagcgtggctgaattattgtgtcaatacgaaaaagtggaggcggatgaa
atccgcttggctgatgtgatttccgggtttcaggaatcagaggaagcggatttaaaggaa
tctgctgcagaagaagcttccgtctcttccgaaggtagcacggaggaggaagaaagtgat
aatggccttgatctagatagagtccgggaacagtttactcaactacgggagttgtatgag
cggtatcaggcggctgatctcaaggataatgatagagcgctagctgaactgagcgagtgc
tttcttcagcttaagcttgtgcctcgtttatctcaacggttgatagaaaatcttcgcgga
gtagtggcagaaattcgtgtgcttgaacggagcatcatgaaaattgcggtgaattcggct
cagatgccccgcaaagattttctgtcttcgttccagaaacaagaaaccaacctaaactgg
gtagaaaagcatatccgggcaaaaaagcattattcttccgtactcagaaaacaaggggac
gcaattcagaaagcccaagaaaagctcatagtcttagagcaaagggccggtatgagtatt
acccagattaaggagattaaccgttccctatctattggagaagcacgggcccggcgggct
aaaaaagagatggtcgaggctaatttgcgcttggtcatttcgattgccaaaaaatatacc
aaccgtggtctccagtttctggatctgatccaggaaggcaacattggtctcatgaaggcc
gttgataaatttgaataccgccgtggttacaagttttctacctatgcgacttggtggata
cggcaggcaattacccgttctatcgctgatcaggctcggaccatccgtattccggtacat
atgattgaaaccatcaataagctcaaccgcgtttctcgtcagatgctacaagagatgggt
cgagagccaacccccgatgagttggcagaacgggtggagatgccaaaagataaagtgcgg
aaggtccttaagattgccagggaacccatctccatggaaacgcctattggtgacgatgag
gattcccatttaggggattttgtcgaggacgctgctgtcatatctccgcctgattcggcg
atcttctccgggctgagggaaactacacagttaatattagccggtttaactccccgcgag
gctaaagtgctgcggatgcgttttgggattgatatgaatacggatcataccttggaagaa
gtaggtaagcagtttgatgtaacccgggagagaattcggcagattgaggctaaggctcta
cgtaaattgcgccatccttcccgttcggagcagcttcgtagttttttggatatagaaaat
aacaactaa
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