KEGG   Nitrosococcus oceani: Noc_0045
Entry
Noc_0045          CDS       T00281                                 
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
noc  Nitrosococcus oceani
Pathway
noc02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:noc00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Noc_0045
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:noc03021]
    Noc_0045
Transcription machinery [BR:noc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Noc_0045
SSDB
Motif
Pfam: Sigma70_ner Sigma70_r3 Sigma70_r1_1 Sigma70_r2 Sigma70_r4 Sigma70_r1_2
Other DBs
NCBI-ProteinID: ABA56587
UniProt: Q3JF09
LinkDB
Position
43212..45020
AA seq 602 aa
MLKIMEQDRQSQLKLLIARGKDRGYLSYSEVNDHLPDDVIDPEQIEDIITMFNDMGISVH
EDMAEADALAIMDTAVADDEVAEEAAAALVSVDGEFARTSDPVRMYMREMGSVELLTREG
EISIAKRIEEGMRQVYTALSRFPGSVAELLCQYEKVEADEIRLADVISGFQESEEADLKE
SAAEEASVSSEGSTEEEESDNGLDLDRVREQFTQLRELYERYQAADLKDNDRALAELSEC
FLQLKLVPRLSQRLIENLRGVVAEIRVLERSIMKIAVNSAQMPRKDFLSSFQKQETNLNW
VEKHIRAKKHYSSVLRKQGDAIQKAQEKLIVLEQRAGMSITQIKEINRSLSIGEARARRA
KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
RQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPDELAERVEMPKDKVR
KVLKIAREPISMETPIGDDEDSHLGDFVEDAAVISPPDSAIFSGLRETTQLILAGLTPRE
AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDIEN
NN
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgttgaaaattatggaacaagatcgtcagtcacaattgaaacttttgatcgcaaggggt
aaggatcggggttatctatcctatagcgaggtaaacgatcacctgcccgacgacgtgatc
gatccggagcaaattgaagacattattacaatgttcaacgatatgggtatctccgtgcat
gaggatatggcggaagccgatgccctagcaattatggataccgccgttgccgacgatgag
gtggctgaggaggctgctgctgctctggtctcggtggatggagagtttgcccgaacttcg
gatccggtccgtatgtatatgcgggaaatgggcagcgttgagcttttgactcgggaaggg
gagatcagcatcgctaagcgaatcgaagagggaatgcggcaagtttataccgctctttct
cgttttccaggcagcgtggctgaattattgtgtcaatacgaaaaagtggaggcggatgaa
atccgcttggctgatgtgatttccgggtttcaggaatcagaggaagcggatttaaaggaa
tctgctgcagaagaagcttccgtctcttccgaaggtagcacggaggaggaagaaagtgat
aatggccttgatctagatagagtccgggaacagtttactcaactacgggagttgtatgag
cggtatcaggcggctgatctcaaggataatgatagagcgctagctgaactgagcgagtgc
tttcttcagcttaagcttgtgcctcgtttatctcaacggttgatagaaaatcttcgcgga
gtagtggcagaaattcgtgtgcttgaacggagcatcatgaaaattgcggtgaattcggct
cagatgccccgcaaagattttctgtcttcgttccagaaacaagaaaccaacctaaactgg
gtagaaaagcatatccgggcaaaaaagcattattcttccgtactcagaaaacaaggggac
gcaattcagaaagcccaagaaaagctcatagtcttagagcaaagggccggtatgagtatt
acccagattaaggagattaaccgttccctatctattggagaagcacgggcccggcgggct
aaaaaagagatggtcgaggctaatttgcgcttggtcatttcgattgccaaaaaatatacc
aaccgtggtctccagtttctggatctgatccaggaaggcaacattggtctcatgaaggcc
gttgataaatttgaataccgccgtggttacaagttttctacctatgcgacttggtggata
cggcaggcaattacccgttctatcgctgatcaggctcggaccatccgtattccggtacat
atgattgaaaccatcaataagctcaaccgcgtttctcgtcagatgctacaagagatgggt
cgagagccaacccccgatgagttggcagaacgggtggagatgccaaaagataaagtgcgg
aaggtccttaagattgccagggaacccatctccatggaaacgcctattggtgacgatgag
gattcccatttaggggattttgtcgaggacgctgctgtcatatctccgcctgattcggcg
atcttctccgggctgagggaaactacacagttaatattagccggtttaactccccgcgag
gctaaagtgctgcggatgcgttttgggattgatatgaatacggatcataccttggaagaa
gtaggtaagcagtttgatgtaacccgggagagaattcggcagattgaggctaaggctcta
cgtaaattgcgccatccttcccgttcggagcagcttcgtagttttttggatatagaaaat
aacaactaa

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