Nocardioides sp. S-1144: FE634_16875
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Entry
FE634_16875 CDS
T06354
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
noo
Nocardioides sp. S-1144
Pathway
noo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
noo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FE634_16875 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noo03021
]
FE634_16875 (rpoB)
03400 DNA repair and recombination proteins [BR:
noo03400
]
FE634_16875 (rpoB)
Enzymes [BR:
noo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FE634_16875 (rpoB)
Transcription machinery [BR:
noo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FE634_16875 (rpoB)
DNA repair and recombination proteins [BR:
noo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FE634_16875 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QDH11091
UniProt:
A0A5B8EK45
LinkDB
All DBs
Position
complement(3510062..3513589)
Genome browser
AA seq
1175 aa
AA seq
DB search
MAARSTSATRSTSTAHPNTGNPRRISFAKIDEPLEVPKLLSLQTDAFDWLVGNANWDAVV
ERRLAAGEDTSRKSGLTEIFEEISPIEDFSETMSLSFENPVFYDPKYSVDECKEKDFTYS
APLYVSAEFTNNDTGEIKGQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERN
ADKTSDKDIYTARLIPSRGAWLEFEIDKRDLVGVRLDRKRKQNITVLLKALQAVAEDTGE
EYDYEAVMADLRQYESIQLTEEKDHTQGPDDALLDIYRKLRPGERPTREAALTLLKNYYF
NPKRYDLAKVGRYKINKKLGLVEAFDKQTLTISDVVNAIKYIVLLHDGADQTEAPGGTIE
VGPDDIDHFGNRRMRTVGELIQNQLRTGLARMERVVRERMTTQDVEAITPQSLINIRPVV
AALKEFFGTSQLSQFMDQTNPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMC
PIETPEGPNIGLIGSLASYGRINPFGFVETPYRKVTDGQVTDQIDYLTADDEDRQIIAQA
NQILDEDGRFVEERVLVRQRDGEVSEILAAEVNYMDVSPRQMVSVATALIPFLEHDDANR
ALMGANMQRQAVPLITSDSPLVGTGIEYRAAVDAGDVVVADHAGVVKEVSADLVETMNDD
GTYTTYKLAKFRRSNQGTCINQRPLVAEGDRVEVGSPIADGPCTDNAEMALGTNLLVAFM
PWQGHNYEDAIILSQRLVQEDVLTSIHIEEHEVDARDTKLGPEEITRDIPNVSEEMLADL
DERGIIRIGAEVTTGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGES
GTVIGVRVFDREDGDELPPGVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAKILPIEDM
PFMEDGTPVDVVLNPLGVPRRMNIGQILELHLGWLAKQGWDLDLSDQTGDADWKQRLISI
HADKAAAGTKLATPVFDGAREDEIIGLLGSTIPNRDGVRMIDGTGKADLFDGRSGEPFAD
PVSVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGA
AYALQELLTIKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLVKEMQSLCLNVEVLSQD
GSQIELRDAEEDVFRAAEELGIDLSRREPSSVEEV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcgcgcagcacctctgccacccgctccaccagcaccgcccaccccaacaccggc
aaccctcgccgcatctcgttcgcgaagatcgatgagccgctcgaggttcccaagctcctc
tccctgcagaccgacgccttcgactggctcgtcggcaacgcgaactgggacgccgtcgtc
gagcgtcgcctcgccgccggcgaggacacctcgcgcaagtccggtctgaccgagatcttc
gaggagatctcgccgatcgaggacttctccgagacgatgtcgctctcgttcgagaacccg
gtcttctacgaccccaagtactccgtcgacgagtgcaaggagaaggacttcacctactcc
gccccgctctacgtctcggccgagttcaccaacaacgacaccggtgagatcaagggccag
accgtcttcatgggcgacttccccctgatgacccccaagggcaccttcgtcatcaacggc
accgagcgggtcgtcgtctcccagctcgtccgcagcccgggcgtgtacttcgagcgcaac
gccgacaagacgtccgacaaggacatctacaccgcgcgcctgatcccctcgcgcggggcc
tggctcgagttcgagatcgacaagcgcgacctggtcggcgtccgtctcgaccgcaagcgc
aagcagaacatcaccgtgctgctcaaggccctccaggccgtcgccgaggacaccggcgag
gagtacgactacgaggccgtgatggccgacctgcgccagtacgagtcgatccagctcacc
gaggagaaggaccacacccagggtcccgacgacgcgctgctcgacatctaccgcaagctg
cgcccgggcgagcggcccacgcgcgaggccgcgctgacgctgttgaagaactactacttc
aaccccaagcgctacgacctcgcgaaggtcggccgctacaagatcaacaagaagctcggc
ctggtcgaggccttcgacaagcagacgctgacgatctccgacgtcgtcaacgccatcaag
tacatcgtgctactgcacgacggtgccgaccagaccgaggcgccgggcggcaccatcgag
gtcggccccgacgacatcgaccacttcggcaaccgccgcatgcgcacggtcggcgagctg
atccagaaccagctccgcacgggcctggcccgcatggagcgcgtggtccgcgagcggatg
acgacccaggacgtcgaggcgatcacgccgcagtcgctgatcaacatccgccccgtcgtg
gcggcgctgaaggagttcttcggcacctcgcagctctcgcagttcatggaccagaccaac
ccgatcgccgggctgacgcacaagcgtcgcctctccgcgctcggccccggtggtctgtcc
cgtgaccgcgccggcatggaggtccgcgacgtgcacccgtcgcactacggccgcatgtgc
ccgatcgagaccccggagggcccgaacatcggcctgatcgggtcgctggcctcctacggc
cggatcaacccgttcggcttcgtcgagacgccctaccgcaaggtcaccgacggccaggtc
accgaccagatcgactacctgaccgccgacgacgaggaccgccagatcatcgcccaggcc
aaccagatcctggacgaggacggccggttcgtcgaggagcgcgtgctggtccgccagcgc
gacggcgaggtctcggagatcctggccgccgaggtcaactacatggacgtctcgccgcgc
cagatggtgtcggtcgcgaccgccctgatcccgttcctcgagcacgacgacgccaaccgc
gcgctcatgggcgccaacatgcagcgccaggccgtgccgctcatcaccagcgactcgccc
ctggtcggcaccggcatcgagtaccgcgccgccgtcgacgccggtgacgtggtcgtcgcc
gaccacgccggtgtggtcaaggaggtctccgccgacctcgtcgagacgatgaacgacgac
ggcacctacaccacctacaagctggcgaagttccgtcgctccaaccagggcacctgcatc
aaccagcgcccgctggtcgccgagggcgaccgggtcgaggtcggctcgccgatcgccgac
ggtccgtgcaccgacaacgccgagatggcgctgggcacgaacctgctggtcgcgttcatg
ccgtggcagggccacaactacgaggacgcgatcatcctctcccagcgcctggtgcaggag
gacgtcctcacctcgatccacatcgaggagcacgaggtcgacgcccgcgacaccaagctg
ggcccggaggagatcacccgcgacatccccaacgtctccgaggagatgctggccgacctc
gacgagcgcggcatcatccgcatcggcgccgaggtcaccacgggcgacatcctggtcggc
aaggtcacgcccaagggcgagaccgagctcacccccgaggagcggctgctccgcgcgatc
ttcggcgagaaggcgcgcgaggtgcgcgacacctcgatgaaggtcccgcacggcgagtcc
ggcaccgtcatcggcgtccgggtcttcgaccgcgaggacggcgacgagctgccgcccggc
gtcaaccagctggtccgcgtctacgtggcccagaagcgcaagatctcggtgggcgacaag
ctcgccgggcgccacggcaacaagggcgtcatcgccaagatcctgccgatcgaggacatg
ccgttcatggaggacggcacccccgtcgacgtcgtgctcaacccgctgggtgtcccgcga
aggatgaacatcggtcagatcctcgagctccacctcggctggctcgccaagcagggctgg
gacctcgacctgagcgaccagaccggcgacgccgactggaagcagcggctgatctcgatc
cacgccgacaaggccgcggccgggaccaagctcgcgacgcccgtcttcgacggcgcccgc
gaggacgagatcatcggcctgctcggctcgacgatccccaaccgcgacggcgtccggatg
atcgacggcaccggcaaggccgacctgttcgacggccgctccggcgagccgttcgcggac
ccggtctcggtgggctacatgtacatcctgaagctgcaccacctcgtcgacgacaagatc
cacgcacgctcgaccggcccctactcgatgatcacgcagcagcccctgggtggtaaggcc
cagttcggcggccagcggttcggcgagatggaggtctgggcgatggaggcctacggcgcc
gcctacgccctgcaggagctgctgacgatcaagtccgacgacgtgcccggtcgcgtcaag
gtgtacgaggcgatcgtcaagggcgagaacatccccgactcgggcatcccggagtcgttc
aaggtgctcgtcaaggagatgcagtcgctgtgcctgaacgtcgaggtgctcagccaggac
ggttcgcagatcgagctccgtgacgccgaggaggacgtcttccgcgccgccgaggagctc
gggatcgacctgtcgcgtcgcgagcccagctcggtcgaagaggtgtga
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