KEGG   Novosphingobium pentaromativorans: JI59_25740
Entry
JI59_25740        CDS       T03399                                 
Name
(GenBank) hypothetical protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
npn  Novosphingobium pentaromativorans
Pathway
npn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:npn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    JI59_25740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:npn03400]
    JI59_25740
Enzymes [BR:npn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     JI59_25740
DNA repair and recombination proteins [BR:npn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     JI59_25740
SSDB
Motif
Pfam: AAA_30 AAA_19 Viral_helicase1 PIF1 TraI_2B PhoH AAA_11 UvrD_C_2 SH3_13 LPD22 AAA_16 Sigma54_activat DEAD Helicase_RecD SLFN-g3_helicase NACHT
Other DBs
NCBI-ProteinID: AIT82842
UniProt: G6EKI7
LinkDB
Position
pLA5:71697..73355
AA seq 552 aa
MATEAIVALEQQRGFALSDEQKGAILALVSGNNAIQVIQGDAGTGKSTLFSFAAAITAQV
GRAPLFLTSQASLVAEMRESGLDAHTLASVLVAHADRAGRMSPGERGRALFEDRLVIVEE
ASMVSTREAALLIELADKAGALKLAFVGDERQIDPVQAGRAFSLMQQHGVPTETLTENRR
QLDPALREAVEHARKGDLGKTFDVLGERVIERADPAAAAAALYLSLSPHERDRTALLTSG
HVLREAVLDHVRDGLLARGELGSQVLSIETLDRLNLTREELRNIRSWAEGMRLEVYRDQA
GLNRGSYKIGIVSPEDNLVQLTSGGEEYWLDPRGLPPSGSGVSLAVPGRTEVREGDRLMF
TTPDKDLGVVNGTRAVVTAIEGETLHLANGERQYALGPDDPAREHIGHAAVLNMHRAQGI
TVDRAIAVMSSGDRLLNSESLHYVLETRAREELTLVTDDKAALRDSIEGHRGSVPHAMDL
APELSDADGEAFDPKTGELLENPVRDAPSPAELFEKAMAREFPAPEKEREPQRENEVERE
EPDIGDDFEMEM
NT seq 1659 nt   +upstreamnt  +downstreamnt
atggcaacagaggcgattgtcgcactggaacagcagcgcggtttcgcgcttagtgacgag
cagaagggcgcgatcctggctctggtatccggtaataatgctattcaggtcattcagggc
gatgcaggtaccggcaagtcgaccctgttcagctttgcggccgcgatcacggcacaagtt
ggtcgcgcgcccttgttccttacgtcgcaggcctcgctcgtcgccgaaatgcgcgaaagc
ggcctcgatgcgcatacgcttgcctcggtgctggtcgcgcatgccgacagggcggggcgc
atgtcgccaggcgagcggggaagggcgctttttgaggaccgcctcgtcatcgtcgaggag
gcgtccatggtctcgacccgcgaggcagcactgttgatcgagctggccgacaaggcaggc
gcgctgaagcttgcctttgtaggggacgaaaggcagatcgacccggtccaggcaggacgc
gcattcagcctgatgcaacagcacggcgtgccgaccgagaccttgaccgaaaatcgccgt
cagctcgatcctgcgctacgcgaagcagtagaacatgcgcggaaaggggatctcggcaag
accttcgatgtgctgggcgagcgcgttatcgaacgggcagacccggctgcagcggcggcc
gccttgtacctgtccctgtcgccacatgaacgggaccggacggcgttgctgacatcgggg
catgtgctgcgggaagccgtgctcgaccatgtccgcgacggcttgctagcgcgcggcgaa
ctcggctcgcaggtgctttccatcgaaacgctggaccggctgaacctcacgcgggaggaa
ttgcgcaacatccgcagttgggccgaaggcatgaggctggaggtgtatcgggatcaggcg
ggcctcaatcgcggttcgtacaagatcggcatcgtctcgcctgaagacaatcttgtgcag
ctgacgtcgggaggcgaagaatattggctcgatccgcgcgggcttcctccatctggctca
ggtgtcagcctggctgtacccgggcggacggaggtgagggaaggggaccggctgatgttc
accacgcccgacaaggatctcggtgtcgtcaacgggacgcgggcagtggtgactgcgatc
gaaggagagacgcttcacctggcgaatggcgagcggcaatatgctcttggcccggacgat
ccggcgcgggagcacattggtcatgcggcggtgctcaacatgcaccgtgctcaggggatc
acggtcgatcgcgctatcgcggtgatgtcgagcggtgaccggctcctcaacagcgaaagc
ctccactatgttctggagacgcgggcgcgagaggagcttactcttgtgaccgacgacaag
gccgcgcttcgagacagcatcgagggccaccgcggcagtgtcccgcacgcgatggatctc
gcgcccgaactgagtgacgctgacggggaggcgttcgaccctaaaacaggcgagttgctg
gagaacccggtccgcgatgcgccaagcccggccgaactgttcgaaaaggcgatggcgagg
gaatttcccgctcctgaaaaggaacgtgagccccagcgggagaatgaggtggaacgcgag
gagcccgacatcggcgacgacttcgagatggagatgtga

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