Novosphingobium pentaromativorans: JI59_25740
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Entry
JI59_25740 CDS
T03399
Name
(GenBank) hypothetical protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JI59_25740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npn03400
]
JI59_25740
Enzymes [BR:
npn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JI59_25740
DNA repair and recombination proteins [BR:
npn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JI59_25740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
Viral_helicase1
PIF1
TraI_2B
PhoH
AAA_11
UvrD_C_2
SH3_13
LPD22
AAA_16
Sigma54_activat
DEAD
Helicase_RecD
SLFN-g3_helicase
NACHT
Motif
Other DBs
NCBI-ProteinID:
AIT82842
UniProt:
G6EKI7
LinkDB
All DBs
Position
pLA5:71697..73355
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AA seq
552 aa
AA seq
DB search
MATEAIVALEQQRGFALSDEQKGAILALVSGNNAIQVIQGDAGTGKSTLFSFAAAITAQV
GRAPLFLTSQASLVAEMRESGLDAHTLASVLVAHADRAGRMSPGERGRALFEDRLVIVEE
ASMVSTREAALLIELADKAGALKLAFVGDERQIDPVQAGRAFSLMQQHGVPTETLTENRR
QLDPALREAVEHARKGDLGKTFDVLGERVIERADPAAAAAALYLSLSPHERDRTALLTSG
HVLREAVLDHVRDGLLARGELGSQVLSIETLDRLNLTREELRNIRSWAEGMRLEVYRDQA
GLNRGSYKIGIVSPEDNLVQLTSGGEEYWLDPRGLPPSGSGVSLAVPGRTEVREGDRLMF
TTPDKDLGVVNGTRAVVTAIEGETLHLANGERQYALGPDDPAREHIGHAAVLNMHRAQGI
TVDRAIAVMSSGDRLLNSESLHYVLETRAREELTLVTDDKAALRDSIEGHRGSVPHAMDL
APELSDADGEAFDPKTGELLENPVRDAPSPAELFEKAMAREFPAPEKEREPQRENEVERE
EPDIGDDFEMEM
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaggcgattgtcgcactggaacagcagcgcggtttcgcgcttagtgacgag
cagaagggcgcgatcctggctctggtatccggtaataatgctattcaggtcattcagggc
gatgcaggtaccggcaagtcgaccctgttcagctttgcggccgcgatcacggcacaagtt
ggtcgcgcgcccttgttccttacgtcgcaggcctcgctcgtcgccgaaatgcgcgaaagc
ggcctcgatgcgcatacgcttgcctcggtgctggtcgcgcatgccgacagggcggggcgc
atgtcgccaggcgagcggggaagggcgctttttgaggaccgcctcgtcatcgtcgaggag
gcgtccatggtctcgacccgcgaggcagcactgttgatcgagctggccgacaaggcaggc
gcgctgaagcttgcctttgtaggggacgaaaggcagatcgacccggtccaggcaggacgc
gcattcagcctgatgcaacagcacggcgtgccgaccgagaccttgaccgaaaatcgccgt
cagctcgatcctgcgctacgcgaagcagtagaacatgcgcggaaaggggatctcggcaag
accttcgatgtgctgggcgagcgcgttatcgaacgggcagacccggctgcagcggcggcc
gccttgtacctgtccctgtcgccacatgaacgggaccggacggcgttgctgacatcgggg
catgtgctgcgggaagccgtgctcgaccatgtccgcgacggcttgctagcgcgcggcgaa
ctcggctcgcaggtgctttccatcgaaacgctggaccggctgaacctcacgcgggaggaa
ttgcgcaacatccgcagttgggccgaaggcatgaggctggaggtgtatcgggatcaggcg
ggcctcaatcgcggttcgtacaagatcggcatcgtctcgcctgaagacaatcttgtgcag
ctgacgtcgggaggcgaagaatattggctcgatccgcgcgggcttcctccatctggctca
ggtgtcagcctggctgtacccgggcggacggaggtgagggaaggggaccggctgatgttc
accacgcccgacaaggatctcggtgtcgtcaacgggacgcgggcagtggtgactgcgatc
gaaggagagacgcttcacctggcgaatggcgagcggcaatatgctcttggcccggacgat
ccggcgcgggagcacattggtcatgcggcggtgctcaacatgcaccgtgctcaggggatc
acggtcgatcgcgctatcgcggtgatgtcgagcggtgaccggctcctcaacagcgaaagc
ctccactatgttctggagacgcgggcgcgagaggagcttactcttgtgaccgacgacaag
gccgcgcttcgagacagcatcgagggccaccgcggcagtgtcccgcacgcgatggatctc
gcgcccgaactgagtgacgctgacggggaggcgttcgaccctaaaacaggcgagttgctg
gagaacccggtccgcgatgcgccaagcccggccgaactgttcgaaaaggcgatggcgagg
gaatttcccgctcctgaaaaggaacgtgagccccagcgggagaatgaggtggaacgcgag
gagcccgacatcggcgacgacttcgagatggagatgtga
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