Nanorana parkeri (Xizang Plateau frog): 108790521
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Entry
108790521 CDS
T04897
Symbol
PAN2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108790521 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108790521 (PAN2)
Enzymes [BR:
npr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108790521 (PAN2)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108790521 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
108790521 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
TXD17-like_Trx
Motif
Other DBs
NCBI-GeneID:
108790521
NCBI-ProteinID:
XP_018416297
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MPVIMNFDALDPALAEYGPALHAPLDPVLDPHLNPGLLQSVELDHDRVGLEGLPVPEPVH
IMEGMYSELHTAVSEVGVPVSAVHFDVHEEMLWVGNHGGHATSFYSPALERYSSFQVHAT
NDIRQIQSLENGVVFLTKNNLKYMMRGGLIIFDYLMDENVDNHSLLFTDSSTLLMAGMQN
HVIQMDLNTVQETQKYTVEDPGITVMRQSNRFFFCGHTSGKVSLRDLRTFKVEHEFDAYS
GSLSDFDVHGNLVVTCGFTSRMNVLGCDRFLKVYDLRMMRAITPLQVHVDPLFLRFVPTY
TSRLAIISERGQCQFCEPSGLANPADIFHVSTVGQLIMSFDVSASKQVLAFGDSDGCIHL
WADTPEATFNTYPRDTEFALPCMVDNLPHLDWNQDLLPLSLIPVPLPNETLLSDWPAANS
TPAPRRAPPVDPEILRTMKQVGFIGYSPNPRTKLRNQVPYQLENDFDTFNQVPESPIGRE
EEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVMYLME
PVRCLVQNHLCQKEFCLSCELGFLFHMLDLSRGDPCQASNFLRAFRTIPEAAALGLILAD
SDEATGKVNLGRLIQSWCRFLLTQLHQETQELEGPQAYRGIGSASTFASTGGSVIGQLFG
CEVENCSMCRCGKETVRLSTTLLFTLSYPEANSNRKEPPDYEFVEILRRSICLEQNTQAW
CENCEKYQPTVQTRNIRCLPDVLVINCEVNSTKEAEFWKTQAEHASKKALKKIEPFPTPN
ESSPVEWNELNNPETAPPPPVLPSVEELRNVWVPYSLKMKLSKNKELEVLNCEENEEPNQ
PEDDKDEATNIYDLKATVVHILDPRTGGSLVAHIKVGETYHQRKEGVTHQQWYLLNDFLI
EPVDKCEAVQFDMNWKVPAILFYTKRSLNSKYNLAIKNPIEASVLLAEASLARKQRKCHA
TFIPLLLNEMPQAAELVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQGP
NEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVK
FVGHGLQKDFRVINLMVPKDQVIDTVYLFHIPRKRMISLRFLAWYFLDLKIQGETHDSIE
DARTALQLYHKYLELSRNGTEPDNFRKVLKSLYEKGRKMDWKVPEPESQNSPKSKMRQCI
LLWWDFNVLFLISFYEFGKVEMTFHVLFLLFFICNEL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcatcatgaattttgatgcattggacccggctttggcagaatatggccccgcc
ctgcatgcgcccttggatccagtccttgatccccacctgaaccctggtcttctacagtct
gtggagcttgaccatgaccgtgttgggttggagggcttgccagtcccggagcctgtgcac
attatggaagggatgtattctgagctgcacacggctgtttctgaggttggagttcctgtc
tctgctgtgcactttgatgtccatgaggaaatgctgtgggttggcaaccatgggggtcat
gccacctccttctacagtcctgctcttgagagatattcctctttccaagtgcacgccaca
aatgatatccggcagattcagagtctggagaacggggttgttttccttaccaagaacaac
ctgaaatacatgatgcgtggtggactgattatctttgactacctgatggatgaaaatgta
gacaatcacagtctattgttcacagacagcagcaccctgctcatggcaggtatgcagaat
catgtcatccagatggatctcaatacagtgcaggaaacacaaaagtatacagttgaagat
cctggtattacagttatgcgacaatccaatcgcttctttttctgtgggcacacatcaggg
aaggtgtcccttagagatctgcgcacttttaaagtggaacatgagtttgatgcctactcc
ggtagcctgtctgactttgacgtccatggaaacctggtagttacttgtggtttcaccagt
cgtatgaatgttttgggttgtgaccgcttcttaaaggtttatgatttacgcatgatgcgg
gccatcacccctctacaggtccatgttgaccccctctttctccgatttgttcctacctat
acatcacgactagcaattatttccgaacgaggtcagtgtcagttttgtgaaccgagtggt
ttggccaatcctgcggacatatttcatgtcagcacagtaggccagcttatcatgtccttc
gatgtgtctgctagcaagcaagttctggcatttggggactctgatggctgcatccatttg
tgggcagataccccagaagcaacatttaatacttacccacgggacacagagtttgcattg
ccttgcatggtggacaacttgccacatttggactggaatcaggaccttttgcctctctct
cttatccccgttccactgccgaatgaaaccttgctttccgattggcctgctgctaattct
actcctgcacctcgtcgggctcctcctgtagatccagagatactgcgcacaatgaagcaa
gttggatttattggctactctcctaatcctagaacaaagctccggaatcaggtgccttat
caactggaaaatgattttgacacttttaaccaagtccctgaatcgccaataggacgcgag
gaagagccccacctctacatggtgcccaaaaagtatcggaaggtaacaataaaatattcc
aaacttggactagaagactttgattttaagcactacaataaaaccctgtttgctggcctt
gagcctcatattcccaacgcctactgcaactgcatgattcaggtgatgtatttgatggag
ccagtccgatgcttggtacagaaccatctgtgtcagaaggagttttgcctaagctgcgaa
ttgggattcttgttccacatgctggatttgtcacgcggtgatccttgccaagccagtaat
ttcttgagagctttccgaaccatccctgaagcagcagcactgggtcttattttggctgat
tcagatgaggcaacaggaaaggtcaatcttggtcgtctaatccagagctggtgccgcttc
cttctgactcaacttcaccaagagacacaggagctggaaggcccacaggcttatcgtggt
attggaagtgccagcacttttgcatcaacggggggctcagtgattggacagctttttgga
tgtgaagtggagaactgcagtatgtgcagatgcggcaaggaaaccgtgcgtctttccaca
accctgctctttaccttgtcataccccgaagccaacagtaatcgtaaagagccaccagac
tatgagtttgtagagatccttaggagaagtatctgtctggaacagaacacccaagcttgg
tgtgaaaattgtgagaagtaccagcccacagtacagactcgaaatattcgctgtcttcct
gatgtgcttgttataaactgtgaagtgaacagcacaaaggaggctgaattctggaagact
caggcagagcatgcttccaaaaaggcactgaagaaaatagagccatttccaactccaaat
gagagcagcccagtagaatggaatgagctcaataatcctgagactgcccctcccccacca
gtattaccttcagttgaggaactccgcaacgtatgggtgccatactctctaaagatgaag
ttgtctaaaaacaaagagcttgaggttctaaattgtgaagagaatgaagagccaaatcaa
ccagaggatgacaaggatgaagcaaccaacatctatgacctcaaggcaactgttgttcat
attttggatcctcggacaggtggcagcttggtagcgcatattaaagtaggggagacatat
caccaaaggaaagagggagtgacgcatcagcagtggtacttgttaaatgatttccttatt
gaacctgttgataagtgtgaggctgtccagtttgatatgaattggaaagttcctgctatt
ttattttataccaagaggagcctaaattccaaatacaacttggcaattaagaacccaatt
gaagccagcgtattactggcagaagcttctcttgcccggaaacaaagaaagtgccatgcc
acgttcattccattgctgctgaatgagatgccacaggcagcagaactagtgggtctggat
gcagagtttgttactcttaatcaggaagaggctgagcttcgaagtgatgggacaaagtcc
actataaaacccagtcagatgtcggtggctcgtatcacatgtgtaaggggacagggacct
aatgagggtgttcctttcatagatgactacatttccacccaggaacaggtggtcgattat
ctgacacagtactctggaataaagcctggtgacttggatgccaagatttcatccaaacat
ctaacaacacttaaatccacatatcttaaattaaggttcctcattgatgtaggagtcaag
tttgtgggtcacggtcttcagaaagattttcgagtgataaatctcatggtgccaaaagat
caggtgattgatactgtgtatttatttcacataccacgcaaacgaatgatctctctccga
ttcttggcatggtatttcctcgacctcaagatccaaggagagacacatgatagtattgaa
gatgcacgaacagctctacagctctatcacaaatacttggagctaagtcgtaacggaacc
gagccagacaacttccgaaaagtcctgaaaagcctttatgaaaagggtcggaaaatggac
tggaaggttccggaaccagagagccaaaacagcccaaaaagtaaaatgcgccagtgtatt
ctgctatggtgggactttaatgtcctttttttaatttctttttatgaatttggtaaagtg
gaaatgactttccatgtactatttttattgttttttatttgtaatgaattgtga
DBGET
integrated database retrieval system
