KEGG   Nanorana parkeri: 108792386Help
Entry
108792386         CDS       T04897                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
npr  Nanorana parkeri
Pathway
npr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    108792386 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:npr03400]
    108792386 (LIG4)
Enzymes [BR:npr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108792386 (LIG4)
DNA repair and recombination proteins [BR:npr03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     108792386 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C BRCT_2 DNA_ligase_IV BRCT RNA_ligase LIG3_BRCT mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 108792386
NCBI-ProteinID: XP_018418656
LinkDB All DBs
Position
Unknown
AA seq 911 aa AA seqDB search
MSASSSSNSVVKDTVASQVPFADLCSTLERIQKSKNRADKVNILKPFVDSWRKFHDALHK
NQPKTTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIKVLGLPKEGKDALKLLNYRTP
TSSNSDAGDFAAIAYFVLKSRCLKDGNLTIQDVNDQLDAIASNNAARKKELIEKSLLHLI
ANTTALEQKWLIRMIIKDMKLGFSQQTVFSIFHRDAAELHNVTTDLEKVCIQLHDPSVCL
SDVSISMFSAFKPMLAAIANIQRIEKQMNHRSFYIETKLDGERMQLHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFVHNLFCIDVQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCYCVFDILMFNDQKLAHETLRKRNDILHKIFTPFTGRIHIVHKTEATTKKEVV
DALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGQ
RGGMMSHFLCAVAETPASGEKPSVFHSVCRIGSGYTMKELYDLGLKLAPHWKRYSKRDPP
SSILCGTEKPEVYIQPGNSVILQVKAAEIVPSDMYKTNCTLRFPRIEKIREDKNWYECMT
VDDLEQFREKASGKLASKHLNINDEPQEKKRKTAPKIRKVIGVASHLKAPDLTNVTKQSN
MFEEVEFCVMSGTEEHSKADLESMIAACGGVVVQNPGQDTYCVIVGATNVRVKNIISSNK
HDVVRAAWLLECFESKTFVPWQPQHMIHMCPSTKEHFASEYDCYGDSYVTDTNENELKEL
FSRMPDNKEKIPLDMIADLEQRYSWEDTFHSIFRQCVVYVDMYATVNDPHTKLPTSSLTI
TALQLRFHGAKVVSRLDEGVSHVIVGDDKSRLTEMKAQRRTFQRKCKIVQVSWVLASLNM
GKLQMEQNYLL
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atgtctgcatctagctcctcaaattctgtggttaaggacactgtagcatcacaagtccca
tttgctgatctttgcagtacattggaaagaattcagaaatcaaagaaccgagctgataaa
gtaaatatactgaagccgtttgttgactcgtggagaaaatttcatgatgctctacataaa
aatcaacccaagacaacagactctttctacccagcaatgcgactcatcttgccacagctg
gaaagggagagaatggcatatggaattaaagagactatgcttgccaaactatacatcaaa
gttctgggcttgcctaaagaaggtaaggatgctttgaaacttttaaactatagaactcct
actagctcaaactctgacgctggagattttgctgcgatcgcttattttgttcttaagtca
cggtgcctaaaagatgggaatttgaccatacaggatgtcaatgatcagttggatgcaata
gcaagcaacaatgcagctagaaagaaagaactcatagagaaaagtcttctgcatttaatt
gctaatactactgccctagaacagaagtggcttataagaatgattattaaagacatgaaa
cttggctttagccagcaaactgtattttccatctttcaccgtgatgctgcagaacttcac
aatgtcaccacggatcttgagaaagtgtgtattcaactgcatgaccccagcgtatgtctc
agtgatgtctctatctcaatgttttctgctttcaaacccatgcttgctgctattgccaat
attcaaagaatagaaaaacagatgaaccaccggagcttttacattgaaactaaacttgat
ggggagagaatgcagttgcacaaagatggtgatgtgtacaaatacttttcccgaaatgga
tttgattacactcagcagtttggtgcctctccccttgaaggctccttgacaccatttgtt
cataacctgttttgtatcgatgtgcaaaattgcattttggacggagagatgatggcttac
aatccaaatactcagacatttatgcaaaaagggaacaaatttgatataaagagaatggtt
gatgattccgatctccaaacttgttactgtgtgtttgatatcttgatgtttaatgaccag
aaattggctcatgaaacacttagaaaaaggaatgacatccttcataaaatatttacccca
tttactggaagaattcacattgttcataaaacagaagctaccaccaaaaaagaagttgtg
gatgcactaaatgaagctattgataatcgcgaagaaggtatcatggtaaaagaccctatg
tccatttataagccagataaacgtggggaggggtggctgaaaattaaaccagagtatgtt
aatgggctaatggatgagttagatcttctaattgttggaggttactggggtaaaggtcag
cgaggtggcatgatgtctcatttcctctgtgccgtagctgaaaccccagcatctggagag
aagccatctgtttttcattctgtgtgtcgcataggctctggttacacaatgaaagagttg
tatgaccttggtttaaagttggctcctcactggaagcgttacagcaagagagatcctcct
tccagtattctatgtggaactgagaagcctgaggtctatatccagcctggtaattctgtc
attcttcaggtaaaggctgcagaaatagttcctagtgatatgtacaaaactaattgtact
ctccgttttcctcgaattgagaagatcagagaggacaagaattggtatgagtgtatgact
gttgatgacttggaacagtttagagaaaaggcttctggaaaattggcttcaaagcactta
aatataaatgatgaacctcaagagaaaaagcgaaaaacggctccaaaaattagaaaggtc
ataggagtggcttcacatctaaaagcaccagatcttactaacgtcacaaaacaatcaaac
atgtttgaagaagttgaattttgcgtaatgagcggaacagaagaacattcaaaggctgac
ctggagagcatgatcgctgcatgtggtggcgtagttgtgcaaaatcctgggcaagacacc
tattgcgtcattgttggagcaacaaatgtccgagtgaagaacatcatttcgtcaaataag
catgacgttgttagagcagcttggctcctggagtgttttgaaagcaaaacatttgtccct
tggcagcctcaacatatgattcatatgtgtccatccaccaaagagcactttgcctctgaa
tacgactgctatggcgacagctatgttacggatactaatgagaacgagctcaaggagctg
tttagcagaatgcctgacaacaaggaaaaaatccctctggacatgattgctgacctagaa
caacgttattcatgggaggacactttccacagtatatttcgccaatgcgttgtatatgta
gacatgtatgcaactgttaatgatccacacactaaacttccaacgtctagtttaactata
actgcactacagctgcgatttcatggcgctaaagtggtgagtcgccttgatgaaggagtt
tctcatgtaattgttggtgatgacaagtctcgattaacagagatgaaagctcagaggaga
acttttcaaagaaaatgtaaaattgttcaagtttcatgggttttggcttcattgaatatg
ggaaaactccagatggaacaaaattatttattgtaa

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