KEGG   Nanorana parkeri: 108795120Help
Entry
108795120         CDS       T04897                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
npr  Nanorana parkeri
Pathway
npr03410  Base excision repair
Module
npr_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108795120 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:npr03400]
    108795120 (LIG3)
Enzymes [BR:npr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108795120 (LIG3)
DNA repair and recombination proteins [BR:npr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     108795120 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C RNA_ligase BRCT_2 mRNA_cap_enzyme FAD_binding_1
Motif
Other DBs
NCBI-GeneID: 108795120
NCBI-ProteinID: XP_018421815
LinkDB All DBs
Position
Unknown
AA seq 987 aa AA seqDB search
MKSLLKLLILQTARIFSPLSSRSFSNTTTPILRYSLRLPYLSTLQFNFAIRNRSCHSMAE
QRYCVEYAKRGTAGCKKCKEKIAKGMVRIGKIVPNPFSESAGDMKEWYHVKCMFEKLERA
RATTKKIDDLTELEGWQELQDAEKEMINQHVKELAAKAGAAPTPRKKTPSKANQPPTAPS
ASPSTMPAPSPSPLKFSGFSAKPESSHSASSSSSGSSLSAAKCDPKHKDCLLREFRKVCA
MVAEQPSYNAKTQIIQDFLTKGTGGDGFHGDTYLTVKLLLPGVIKSVYNLNDKQIVKLFS
RIFNCNLEEMVRDLEQGDVSETVRIFFEESKTFSPATKSLLTIQEVDDLLNQLSKMTKEE
DQQKVLEDIAHRCTSNDLKCIIRLIKHDLKMNAGAKHVLDALDPNGHDAFKASRNLEDVV
ERVLQNQQQAPGMKRTLSVKATLMTPVQPMLAEACKSVEYAMKKCPNGMYAEIKYDGERV
QVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGNSIILDSEVLLIDTKTSKPLPF
GTLGVHKKAAFQDANVCLFVFDCIYFNGVSLMDRPLVERRKFMRENMVEIPNHILFSEMK
HVTKASDLADMITRVIREGLEGLVLKDLKSMYEPGKRHWLKVKKDYLNEGAMADTADLAV
LGAFYGKGANGGMMSIFLMGCYDTESGKWCTVTKCSGGYDDATLARLQKELEMVKISKDP
SKIPSWLKINKNYYPDFIIRDPENAPIWEITGAEFSKAEAHTAGGISIRFPRCTRFRDDK
DWKTATTLQQLKELYQISKEKCDFTVTATSSQDEEGSSESSSRDNEANSRPPTPSGSVKK
PKSSSSKSPGKDKRNDSGKLSQPKKSDEPAKAEKRKIVSPVSVDSKKVKLSSASNGNGHN
VAQPSATAKTLLDIFTGVRLYLPASLEEFSKLRRYFIAYDGDLVPEFDAPSATHVMGDIP
ECAEDAKHVTPRWIWECIRRRRLVAPC
NT seq 2964 nt NT seq  +upstreamnt  +downstreamnt
atgaaaagtttattgaaacttttgattctgcaaacggcaaggatattctcaccactgtca
tcaaggagcttttcgaacactactactcctattctgcgttactcactaagattaccatat
ctcagcaccttacaattcaactttgctataagaaatagaagctgccacagcatggcagag
caacgttactgtgtagaatacgccaagcgcggaactgcaggctgcaagaaatgcaaagaa
aagatagcaaaaggcatggtacgaattggaaaaatagttccaaatccttttagtgaatca
gcaggagatatgaaggagtggtaccatgtcaagtgcatgtttgagaagttggagcgtgca
cgggcaactacaaagaagattgatgacctcaccgagcttgagggttggcaagagctacag
gacgctgaaaaggaaatgattaatcagcatgtaaaagagcttgctgctaaagctggagct
gcaccaacacctcggaaaaagactccttcaaaggcgaatcaacccccgacagcaccaagt
gcatctccatcaacaatgcctgcaccgagcccttcacctttaaagttttctgggttttca
gcaaagcctgaatcctcacattcggcatccagttccagtagtggttcaagtctgtctgca
gcaaaatgtgatccaaaacacaaggactgtctactgcgtgaattccgcaaagtatgtgcc
atggttgcagagcagccaagctataatgccaagacccagatcatccaggatttcctaaca
aaaggaactggtggagatggtttccatggagatacatacttgacagtgaaactgctatta
cccggtgttatcaagagtgtttacaacctcaacgataaacagattgtcaagctctttagt
cgtatattcaactgcaacctagaggaaatggttcgagaccttgagcagggagatgtgtca
gagaccgttcggattttctttgaagagagtaaaaccttctccccagctactaagagtctc
ctgacaattcaagaagtagatgacctgctcaaccagctttctaaaatgaccaaagaagaa
gaccagcagaaagtactggaggacattgcacacagatgtaccagtaatgatctgaagtgc
atcattcggctaataaagcatgatttgaaaatgaatgcaggagctaaacacgtacttgat
gctctcgatcctaatggacatgatgcattcaaagcatcccgcaatttggaagatgtggtg
gaacgtgtgctacaaaaccagcagcaggcaccaggcatgaaacgcacacttagcgtaaag
gctacgctaatgacgcctgttcagcctatgttggctgaggcctgcaaatctgtagagtat
gctatgaagaaatgtccaaatggaatgtatgcagagataaagtatgatggagaacgcgtc
caggtgcacaaaaacggtgatcacttcagctattttagccgtagtctgaagccagttctt
ccccacaaggttgctcatttcaaagactatattcccaaagctttccctggtggcaatagc
ataatcttggactctgaagtgcttcttatcgataccaagaccagcaaaccccttccattt
ggaacgttaggagttcacaagaaagctgctttccaggatgccaatgtatgcctctttgtt
tttgactgcatatattttaatggtgtcagcttaatggacaggccattagttgagagacga
aagtttatgcgtgaaaatatggtggaaatccctaaccatatattgttctcagaaatgaaa
catgtcacgaaagcatcagatttggcagacatgattacccgagtaatcagagaaggttta
gaaggccttgtgctaaaagatttgaagtcaatgtatgagccaggaaagcgtcactggctg
aaggtgaaaaaggattacttgaatgaaggtgctatggcggacactgctgatcttgcagtt
ttgggagcattttatggaaaaggagcaaatggtggtatgatgtctatattccttatggga
tgttatgacacagagagcggcaagtggtgcacagtgacaaaatgctcaggtggttatgat
gatgcaacgcttgcccgtttacaaaaggagctggaaatggtcaagatcagcaaggaccca
tctaaaatcccttcatggctgaaaatcaacaagaactattacccggacttcataatacgg
gatcctgagaatgcccctatctgggagattacaggagcagagttctccaaggcagaggcc
cacacagctggtgggatttctatacgtttcccgcgttgcacccgcttccgagatgacaaa
gattggaaaacagccaccactttacagcagctaaaggagctatatcagatctcaaaagag
aagtgtgatttcactgttacggccacgtcatctcaggatgaggaaggctcttctgagagc
agcagtcgggacaatgaagcaaactctagaccaccaacacctagtggctctgtgaagaaa
ccaaaaagctcaagttctaaatcacctggcaaagataaaagaaatgacagtggcaaactt
tcccaaccaaagaaaagcgatgaaccagctaaagcagagaagaggaaaatcgtatcacca
gtctctgttgatagtaaaaaggtaaaactctccagtgcaagtaatggcaacgggcacaat
gtggcacaaccgtcagccacagccaaaacccttctggatatattcacaggagtgaggctt
tatctgcctgcttctcttgaagaattttcaaaattgcgccgctacttcattgcttatgac
ggtgatctcgtcccagaatttgacgctccttctgccacacatgtgatgggggatattcct
gaatgtgctgaggatgccaagcatgtgacaccacgttggatatgggaatgcattagacgc
agaaggctagtagcaccttgctga

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