Novosphingobium resinovorum: BES08_11285
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Entry
BES08_11285 CDS
T04490
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nre
Novosphingobium resinovorum
Pathway
nre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BES08_11285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nre03019
]
BES08_11285
03400 DNA repair and recombination proteins [BR:
nre03400
]
BES08_11285
Enzymes [BR:
nre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BES08_11285
Messenger RNA biogenesis [BR:
nre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BES08_11285
DNA repair and recombination proteins [BR:
nre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BES08_11285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
DUF5637
Motif
Other DBs
NCBI-ProteinID:
AOR78637
UniProt:
A0A1D8A936
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All DBs
Position
2394510..2396273
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AA seq
587 aa
AA seq
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MSKALHDVFGFSGFRGVQDLVVDRVIHGQSTLAIMPTGAGKSLTYQLPAVLLQGTCVVVS
PLIALMHDQLRSARANGIRAATLTSADTDRGATMDAFRAGELDLLYIAPERASQPHFREL
LLSARVGLFAIDEAHCVSEWGHDFRPDYRLLRPLLDAFPQVPRLALTATADNHTRSDILA
QLGIPDEGLIVAGFDRPNIRYAIRPRESVGRQLKAVVEENPGPGIIYAPTRARVEQLAES
LARDTGRRVLPYHAGLPPEVRARNQAAFVASEDMVMVATVAFGMGIDKPDVRFVAHAGIP
KSIEGYYQETGRAGRDGDPSVAIMFWGADDFARARQRLSEIEPHRQQSERQRLDSLAGLV
ETAECRRAVLLRHFGETPAQTCGNCDNCLQPVGVVDVTDVARKLLSAVYRTGQSYGLGHL
EKVLTGVSDDRVLQRGHDRLSVFGILTEDEKPLLKALARALQARGSLTATEHGGLALGGD
ARAILKGEAAVAIVVPPKQDRKRRSRGGDAGANPVGDPLFEALRELRRELAKEAGVPPYV
IFHDSTLREMAGSRPSSLAELGLVGGVGTRKLEAYGDAFVEVIRRHA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaaagcgctgcacgacgtcttcggtttctcgggctttcgcggcgtacaggatttg
gtggtcgatcgcgttatccacggccagtcgacgctggcgatcatgcccaccggtgcgggc
aagtcgttgacctaccagttgcccgccgtgctgctgcagggcacgtgcgtggtcgtctcg
ccgctgatcgcgctgatgcacgaccagttgcgctccgcccgcgccaacggcatccgcgcc
gccaccctgaccagcgccgacaccgatcgcggggcgaccatggacgcctttcgcgccggc
gagctggacctgctctacatcgccccggaacgcgccagccagccgcacttccgcgaactg
ctgctatcggcccgggtcggtctctttgcgatcgacgaggcgcactgcgtctccgaatgg
ggccacgatttccgtcccgattaccgcctgctgcgccctttgctcgatgcgttcccgcaa
gtcccacggctggcgctgacggcgactgcggacaaccacacccgcagcgatatcctcgca
caactcggtattcccgacgaggggctgatcgtcgccgggttcgaccggccgaacatccgt
tatgccattcgcccgcgcgagagcgtaggccgtcagctcaaggcggtggtcgaggagaat
cccggtccggggattatctacgcccccacccgcgcacgcgtagagcagctggccgagagc
cttgcccgcgacaccggccgccgcgtgctgccctatcacgcaggcctcccgcccgaagtc
cgcgcgcgcaaccaggccgcattcgtggcgagcgaggacatggtgatggtcgccacggtc
gccttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcccatgcgggcatcccc
aagtcgatcgagggctactaccaggaaaccggccgcgccgggcgcgatggcgatccttcg
gtggccatcatgttctggggcgccgacgacttcgcgcgagcgcgccagcgcctgtccgag
atcgagcctcaccgccagcagagcgaacgccagcgcctcgattcgctggccggtctggtc
gaaaccgccgaatgccgccgcgccgtgttgctgcgtcacttcggcgaaaccccggcgcag
acttgcggcaactgcgacaactgcctccagcctgtcggcgtggtcgatgtcaccgatgtc
gcgcgcaagctgctatcggccgtctatcgcactgggcagtcctatggcctgggtcatctg
gaaaaggtgctgaccggcgtttccgatgaccgcgtgctgcagcgcgggcatgacaggctg
tcggtgttcggcatcctcaccgaagacgaaaagccgctgctgaaagcgcttgcccgcgct
ctgcaggcgcgtggcagcctgaccgcgaccgagcacggcggtcttgcgctgggaggagac
gctcgcgcgatcctgaagggggaggctgctgtagcgatcgtcgtgccacccaaacaggac
cgcaaacgccgctcgcgcgggggagatgccggagccaatcccgtcggcgaccctttgttc
gaggcgctgcgcgagttgcgccgcgagctggcaaaggaggcaggcgtcccgccctacgtc
atcttccacgattcgaccttgcgcgaaatggccggctcacgcccatcctcactggcggaa
ctcggcttggtcgggggcgtcggaacacgcaagctggaagcctatggcgacgcgttcgtc
gaggtgatccggcgccacgcctga
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