KEGG   Novosphingobium resinovorum: BES08_17875Help
Entry
BES08_17875       CDS       T04490                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nre  Novosphingobium resinovorum
Pathway
nre03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BES08_17875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nre03400]
    BES08_17875
Enzymes [BR:nre01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BES08_17875
DNA repair and recombination proteins [BR:nre03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BES08_17875
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DUF3809 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOR78794
UniProt: A0A1D8A9J8
LinkDB All DBs
Position
pSA1:complement(31308..33854)
Genome map
AA seq 848 aa AA seqDB search
MAAVPASGRSGKAGAPGADLLAEYNRKRDFAKTAEPAGKRSKTGGNAFIVQKHAARRLHW
DFRLDVDGVLKSWAVTRGPSADPDDKRLAVRTEDHPLSYGEFEGGIPKGEYGGGTVMLWD
RGTWAPIAGKSAKDIEDGHLHFTLDGERMKGEWLLVRMKPRPGEKRENWLLRKVKDAHAQ
TGDALVEQGLTSVLTGRTMAEIEADKGGTHSLKGKKGDAFAQVMEKAASRNARHKNRSRK
GAGKLPKFRPVQFATLVDTVPTGNLWMHEIKFDGYRALVAAAGGKVVVHTRSGLDWTDKF
GPLAAHIAALDLPPCLIDGELIARGTDGNPDFSSLQAVLKRGKGSQGEDQPLEFHAFDLL
ELDGENLAAMPNIERKERLEALLADAVPPIFVADHVIGAGETLYDAMCGAGQEGIIAKRI
DAPYRGRRTKDWVKVKCTRRQEFVIVGWAKSSAKGRPFSSLLLGQYEDKTLIYRGKVGTG
FDAEGLADMATRLEKLARKTPPLSVDKAEARGASWVTPKLVAEVAFAELTGEGRVRHGSF
LGLRIDKKARAVTPEKAQAPPRAEIAVKISNRERVIFPESGNSKGDLADYYAAVAPLMLP
FVTNRPISLVRCPQGRAKKCFFQKHDSGTFGEHVHHVPIREKDGGAEDYLYLNDAEGLLS
CVQMGTIEFHGWAARVDDVERPDRMIFDLDPDEGLDFKECIRAAGDIRARLADLGLVTFA
MLSGGKGVHVVVPLKRGHDWDTHKDFARRFAEAMSLAEPDRYVATMSKARRKGRIFIDWL
RNQRGATAVLPYSARSRDRAPVAVPVSWDELDGMKTAHPFSIGDAAELIRRSERLHGWGF
AEQRLPEI
NT seq 2547 nt NT seq  +upstreamnt  +downstreamnt
gtggcagccgtgcccgcaagcgggcgtagcggcaaggccggcgcccccggcgccgacctt
ctcgccgaatacaaccgcaagcgcgacttcgcgaagaccgccgaacctgcgggcaagcga
agcaagaccggcggcaacgccttcatcgtgcagaagcatgcggcgcggcggctgcattgg
gatttccgactcgacgtcgatggtgtgctcaagtcctgggcggtgacccggggaccgagc
gccgatcccgacgacaagcgccttgccgtgcgcaccgaggaccaccccctgtcctacggc
gaattcgagggcggcatccccaagggcgaatacggcggcggtacggtgatgctctgggac
cggggcacctgggcgccgatcgcgggcaagagcgcgaaggacatcgaggacggccacctc
cacttcactctcgatggcgagcggatgaagggcgaatggctgctcgtgcgcatgaagccc
agacccggcgagaagcgcgagaactggttgctgcgcaaggtgaaggatgcccatgcgcag
acgggtgatgcactcgtcgaacagggcctcaccagtgtgctcaccggccgcaccatggcc
gagatcgaagccgacaagggcggcacccactcgctgaagggcaagaagggcgatgccttt
gcgcaggtcatggagaaggccgcctctcgcaatgcgcggcacaagaaccgctcccgcaaa
ggcgcgggcaagctgccgaagttccgtcccgtccagttcgccactctggtcgacaccgtg
cccaccggcaacctgtggatgcatgagataaagttcgacggctaccgcgcgctcgtcgcg
gcggcggggggcaaggtcgtggtccatacccgcagcggcctcgactggacggataagttc
ggcccgttggccgcgcatatcgccgcgctcgacctgccgccctgcctgatcgatggggag
ctcatcgcccggggcacggacggcaatcccgatttctccagcctccaggccgtactcaag
cgcggcaagggtagccagggcgaagaccagcccttggaattccacgccttcgatctcctc
gaacttgatggcgagaatctggcggcgatgcccaacatcgagcgcaaggaacggctggag
gcgctgctggctgatgccgtgccgcccatcttcgtcgccgaccacgtgatcggcgctggc
gagacgctctacgatgcgatgtgcggcgccgggcaggaagggatcatcgccaagcgcatc
gatgcaccctaccggggccgccgcacgaaagactgggtcaaggtcaagtgcacccggcgg
caggagttcgtcatcgtgggatgggcgaagtcgagcgcaaagggccggccattctcctcg
ctgctgctggggcagtacgaggacaagacccttatctatcgcggcaaggtgggcaccggc
ttcgacgcggagggtcttgccgacatggcgacaaggcttgaaaagctggcgcgcaagacc
ccgccgctgagcgtcgataaggcagaggcacgcggcgcaagctgggtcaccccgaaactg
gtggcggaagtggccttcgccgaactgaccggcgaaggccgcgtgcgtcatggcagcttt
ttgggcctcaggattgacaagaaggctcgggctgtcacgccggagaaagcgcaggccccg
ccacgggcggagattgccgtgaagatcagcaaccgcgagcgcgtgatcttccccgaaagc
ggcaactccaagggcgaccttgcggattactacgccgccgtcgcgccgctgatgctgccg
ttcgtgacgaaccggccgatcagtctcgtccgttgcccgcaaggccgggcgaagaaatgc
ttcttccagaagcacgacagcggcacgttcggcgaacacgtccatcacgtgccgatccgc
gaaaaggacggcggcgcggaggactacctctatctcaatgacgcagagggccttctctcc
tgcgtgcagatgggcacgatcgaattccacggctgggcggcaagggtcgacgacgttgaa
cgtcccgaccgcatgatcttcgacctcgaccccgacgagggattggatttcaaggaatgc
atccgagccgccggcgacatccgtgcccggctcgcggaccttggcctggtgaccttcgca
atgctgtccggcggcaagggcgtccatgtcgtcgtgccgctcaagcgcgggcacgactgg
gacacccacaaggacttcgcccgccgcttcgccgaagccatgagccttgccgagccggac
cgctacgtcgcgacgatgagcaaggccaggcgcaagggccgcatcttcatcgactggctg
cgcaaccagcgcggagcgaccgccgtgctgccctactccgcacgatcacgcgacagggct
ccggtcgcggtgccggtgagctgggatgaactggacgggatgaagactgcgcatcccttc
tcgattggcgatgctgcggagctgatcaggcggtccgaacgactgcatggctggggcttt
gccgagcagcggcttccggagatctga

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