KEGG   Novosphingobium resinovorum: BES08_21660Help
Entry
BES08_21660       CDS       T04490                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nre  Novosphingobium resinovorum
Pathway
nre03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BES08_21660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nre03400]
    BES08_21660
Enzymes [BR:nre01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BES08_21660
DNA repair and recombination proteins [BR:nre03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BES08_21660
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AOR79438
UniProt: A0A031JR67
LinkDB All DBs
Position
pSA1:complement(936274..938784)
Genome map
AA seq 836 aa AA seqDB search
MARATKAKPTSAEDRLAKYREKRDFARTAEPSGASEPTPGNGFVVQKHAATRLHYDFRLE
LDGTLVSWAVTRGPSANPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWE
PLAGKDPVKTLAEGHLHFTLHGRRMKGEWIMFRLKPRGKEKGENWILRKVDDEFAGGSDD
LIGIHLTSVDSGRTMEEIAAGKPVRKQGGKAKGPAAKRKSSSAAPRRAENKSKLPPFQPV
QLAALVDHVPPGDRWLHELKYDGYRTLIAVGGVEGRAYTRSGLDWSDRFAGLITEATQLD
VESALIDGEAVVTLPDGRTSFQALQAALKDNPGAIDYFAFDLLEMNGEDLTSLPLIERKE
RLASILEGQKGRLRYSDHIVGNGEKLLTSFCEAGLEGVISKRVDARYSGSRSGSWVKTKC
IRRQEFVIVGWTPSDKQRGFRSLLLGVHEDGKLRYAGKVGTGFTGDEIERLLEIMAPLVR
KEPTVQAPRSAVRGAHWIEAKLVAEIAYLEFTDEGVLRHPSYLGLREDKKPEAVVIEKEA
PVAVATAAPASTVKVSNRDRVIFPEGKLTKGQLADYYELVAPLMLPWAGSRPVSLVRCPQ
GRAKKCFFQKHDAGSFGDDVKHIGIREKDGHDEAYLFVDTPAGLLTCVQMGTIEFHGWGA
RIEDVEKADRLVFDLDPDEGLGFKDVVSAAFHVRDLLAQMGLTTFPMVTGGKGVHVIAPL
TPSAEWPQVKDFAHRFAQALEQAEPDRYTAALSKARRTGRIFVDYLRNQRGATAVMPYSA
RNREFAPIAVPLTWDELHDLDAPSHWHIGDGGEMLKRASSKNLAHWGRADQVLPDL
NT seq 2511 nt NT seq  +upstreamnt  +downstreamnt
atggcacgggcgacaaaggcgaaaccaacttcggcagaagatcggctcgcgaaatatcgc
gagaagcgggatttcgcgcgtaccgcggaaccctccggtgcctccgagccgacgccgggt
aatggcttcgttgtccagaagcatgccgcgacgcgcctgcattatgacttccgtctcgag
ctggacggcacgctggtcagctgggcggtgacccgagggccaagcgctaaccccgacgac
aaacgcctggcagtccgtactgaagaccacccgctcgattatgcccgtttcgaagggacc
attccgaagggggagtatggtggcggcaccgtgatgctctgggacaatggcacctgggag
ccgctcgcgggcaaggatcccgtcaaaaccctcgcagaagggcatctgcatttcaccctt
cacggccgccgcatgaagggcgagtggatcatgttccgcctcaagccacgcggaaaagag
aagggagaaaactggatcctgcgtaaggtcgacgacgagttcgcaggtggctcggatgac
cttatcggcatccatctcacgagcgtcgacagcggacggacgatggaagaaatcgctgca
ggcaagccggtccggaaacagggcggcaaagccaaaggccccgccgcgaaacgcaaatca
tcgagcgccgcgccccgaagggccgagaacaaaagcaaactcccgccattccagcctgtc
cagcttgctgctctcgtcgatcacgtgccaccgggcgatcgctggctgcatgagttgaag
tatgacggctatcgaacgctcattgccgttggcggcgtcgaagggcgggcctatacccgg
tcaggtctggactggtcggatcggttcgcaggccttatcacagaggctacgcagcttgac
gttgaaagcgcactgatagacggagaggccgtcgtaacgctgccggatggccggaccagc
tttcaggcgctgcaagccgctttgaaggacaatccgggggccatcgactatttcgcgttc
gacctgctggaaatgaacggcgaggatctcaccagcttgccgctgattgagcgtaaggag
aggctggcgagcattcttgagggccaaaagggtcggctgcgctattcagatcatatcgtc
ggcaacggtgaaaagctgctgaccagtttttgcgaggcagggctggaaggcgtcatatcg
aaacgcgtcgacgctcggtatagcggctcgcggagcggaagctgggtcaagaccaagtgc
atacgccgccaggagttcgttatcgtaggctggacaccttctgacaagcagcgggggttc
cgctcgcttcttttgggcgtacacgaggatgggaagctgcgatacgccggcaaggtcggc
acgggatttaccggcgacgagatagagcgccttctggaaatcatggcgcccctcgtgcgc
aaggagccgacggttcaggctccgcggtctgctgtgcgcggcgcccactggatcgaggcg
aagctggttgcggagattgcgtacctcgagttcaccgatgagggggtgctgcgccatccc
agctaccttgggcttcgagaagataaaaagcccgaagcggtggtgatcgagaaggaggcc
ccggtggcggttgccacggccgcgcccgcgagcacggtgaaagtgagcaaccgggacaga
gtgatcttcccggagggcaagcttaccaagggccagctggcagactattacgaattggtt
gcaccgctcatgctcccctgggcaggaagccggcccgtcagtctcgttcgctgtccgcaa
ggccgggcgaagaagtgcttctttcagaagcatgatgcgggcagcttcggcgatgacgta
aaacacatcggcattcgcgaaaaggacgggcatgacgaggcctatctcttcgtcgacact
ccggcaggtctgctgacctgtgtgcagatgggcacgatcgagttccatggctggggcgcg
cggatcgaggacgtcgaaaaggccgacaggctggtttttgatctcgaccccgatgaagga
cttgggttcaaggatgtcgtctcggccgctttccatgtgcgcgatctcctcgcccagatg
gggcttaccacattccccatggtcaccggcggcaagggggttcatgtgatcgccccgctc
accccatcggccgaatggccgcaggtgaaggattttgctcatcggttcgctcaagcgctg
gagcaggcagaacccgatcgctatacagccgcgttgtccaaggcccggcggacagggcgc
atattcgtcgactacctgcgcaaccagcgcggcgcgaccgctgtgatgccctacagcgcc
cgtaaccgcgagtttgcgcccatcgccgttcctctgacatgggatgaactgcacgatctc
gatgcgccttcgcattggcatattggtgacggtggcgaaatgctgaagcgcgcgtcgtcc
aaaaacctcgcccactgggggcgggcggaccaggtgctgcccgatttgtag

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