Nocardia sp. Y48: BOX37_27860
Entry
BOX37_27860 CDS
T04582
Definition
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nsl
Nocardia sp. Y48
Pathway
nsl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BOX37_27860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsl03400
]
BOX37_27860
Enzymes [BR:
nsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BOX37_27860
DNA repair and recombination proteins [BR:
nsl03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BOX37_27860
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Other DBs
NCBI-ProteinID:
APE37110
UniProt:
A0A1J0VYM6
LinkDB
Position
complement(6222066..6223025)
AA seq
319 aa
MTRLPHYAAMLATAGQLPVDDGRWGYEMKYDGIRAIAYVDDGLRLESRNGNDITVAWPEL
TGLAPAEPGFVVDGEIVIEHAGRSSFQALAPRMHQRNPATIRALAETTPATYMIFDLLHI
GDRSLIELPYAQRRELLERIGLAGPHWRIPHLLPGPAADALAVSKELGAEGIICKRRESW
YLPGQRSPAWTKIKNVSHQEVVVIGWKTGAGRRAGQIGSLLVAVPDDRGSLEYAGSVGTG
FTAAMLADLRERLTPLQQPDPPIPGLGPTPDAVAWVRPALIGEVAFTEWTGDGRLRHPSW
RGLRLDKDLDEIETPTGRP
NT seq
960 nt
+upstream
nt +downstream
nt
atgacccgattgccgcactacgccgcgatgctggccacggcgggccaactgcccgtcgac
gatggccgctggggctatgaaatgaaatatgacggaatccgggctatcgcatatgtcgat
gacgggctgcgcctcgagtcgcgcaatggcaatgacatcaccgtcgcgtggcccgagctc
accgggctggctccggccgagcccggtttcgtggtcgatggggagatcgtgatcgaacac
gcgggccggtcctcgtttcaggcgttggcgccgcggatgcatcaacgcaacccggccacg
atccgggcgctggcggaaacgactccggcgacctatatgatcttcgacctgctccacatc
ggtgaccgttcattgatcgagttgccctacgcccagcggcgcgaactccttgagcgcatc
gggttggctggaccgcattggcggatcccgcatctgttaccgggcccggccgctgacgct
ctggcggtttctaaagagctgggggccgagggcatcatctgcaaacggcgcgaaagctgg
tacctgcccggccaacgcagtcccgcctggaccaagatcaagaacgtcagtcatcaagag
gtcgtggtgatcggatggaagaccggagcgggtcggcgcgcgggacagatcgggtcactg
ctggtcgcggtgcccgatgaccggggcagcctcgaatacgccggtagcgtcgggaccggg
ttcaccgccgcgatgctcgccgatctgcgtgaacgccttactccgctgcaacagccggac
ccgccgatccccggcctcgggcccaccccggacgcagtggcctgggtcaggccggcgttg
atcggggaggtggcgttcaccgaatggaccggcgacggccggttgcggcatcccagctgg
cgagggctgcggctggacaaggatctcgacgagatcgaaactccgaccgggcggccgtga
DBGET
integrated database retrieval system
