KEGG   Nocardia sp. Y48: BOX37_27860Help
Entry
BOX37_27860       CDS       T04582                                 

Definition
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nsl  Nocardia sp. Y48
Pathway
nsl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nsl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BOX37_27860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nsl03400]
    BOX37_27860
Enzymes [BR:nsl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BOX37_27860
DNA repair and recombination proteins [BR:nsl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BOX37_27860
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: APE37110
UniProt: A0A1J0VYM6
LinkDB All DBs
Position
complement(6222066..6223025)
Genome map
AA seq 319 aa AA seqDB search
MTRLPHYAAMLATAGQLPVDDGRWGYEMKYDGIRAIAYVDDGLRLESRNGNDITVAWPEL
TGLAPAEPGFVVDGEIVIEHAGRSSFQALAPRMHQRNPATIRALAETTPATYMIFDLLHI
GDRSLIELPYAQRRELLERIGLAGPHWRIPHLLPGPAADALAVSKELGAEGIICKRRESW
YLPGQRSPAWTKIKNVSHQEVVVIGWKTGAGRRAGQIGSLLVAVPDDRGSLEYAGSVGTG
FTAAMLADLRERLTPLQQPDPPIPGLGPTPDAVAWVRPALIGEVAFTEWTGDGRLRHPSW
RGLRLDKDLDEIETPTGRP
NT seq 960 nt NT seq  +upstreamnt  +downstreamnt
atgacccgattgccgcactacgccgcgatgctggccacggcgggccaactgcccgtcgac
gatggccgctggggctatgaaatgaaatatgacggaatccgggctatcgcatatgtcgat
gacgggctgcgcctcgagtcgcgcaatggcaatgacatcaccgtcgcgtggcccgagctc
accgggctggctccggccgagcccggtttcgtggtcgatggggagatcgtgatcgaacac
gcgggccggtcctcgtttcaggcgttggcgccgcggatgcatcaacgcaacccggccacg
atccgggcgctggcggaaacgactccggcgacctatatgatcttcgacctgctccacatc
ggtgaccgttcattgatcgagttgccctacgcccagcggcgcgaactccttgagcgcatc
gggttggctggaccgcattggcggatcccgcatctgttaccgggcccggccgctgacgct
ctggcggtttctaaagagctgggggccgagggcatcatctgcaaacggcgcgaaagctgg
tacctgcccggccaacgcagtcccgcctggaccaagatcaagaacgtcagtcatcaagag
gtcgtggtgatcggatggaagaccggagcgggtcggcgcgcgggacagatcgggtcactg
ctggtcgcggtgcccgatgaccggggcagcctcgaatacgccggtagcgtcgggaccggg
ttcaccgccgcgatgctcgccgatctgcgtgaacgccttactccgctgcaacagccggac
ccgccgatccccggcctcgggcccaccccggacgcagtggcctgggtcaggccggcgttg
atcggggaggtggcgttcaccgaatggaccggcgacggccggttgcggcatcccagctgg
cgagggctgcggctggacaaggatctcgacgagatcgaaactccgaccgggcggccgtga

DBGET integrated database retrieval system