Nicotiana tomentosiformis: 104118697
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Entry
104118697 CDS
T05025
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104118697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104118697
03019 Messenger RNA biogenesis [BR:
nto03019
]
104118697
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104118697
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104118697
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
104118697
NCBI-ProteinID:
XP_009628296
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MDEGEGGLSFDFEGGLDTGPTHPTASVPVMTQSSDHNIAAAAAPNANINQPPTVSAHVGG
DVGFVGNRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVY
KHTIEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLASNNYGYSNRFY
QNRNANYSTQAEKSQASQGQNGMGLAVKSTAAETPIIQQIQPHQQQVLQTQQQGGPTQTQ
IHPNGQQNQTDRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
VENVILIFSVNRTRHFQGCAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCELSF
QKTHHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKRQEEK
AKGVNPDNGNDNPDIVPFEDNEEEEDEESEDEDESFDQGFGPAALGRGRGRGIVWPPIMP
LGHGPRPLPGMRGFPPGMMGDGFSYGAMTPDGFPMPDHFGMGPRPFGPYGPRFSNDMMFH
GRPPAGGFGMMMGPGRPPFMGGMGPGATGPPRAGRAVGMHPSFVPPSSQPSQNPYRPKRE
QRAPVHDRNDRFSSGSDQGKGQEMAGSVGGPDGVNYPQRGKPEQDAQFGAGNSFKNDESE
SEDEAPRRSRHGDGKKKRRDTDDDAATASEK
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggtttaagctttgatttcgagggcggcttagacactgggccg
acacacccaactgcttccgtaccagtaatgacacaatcttccgatcacaacattgccgcg
gccgccgccccaaatgctaacattaaccagccgcctactgtctcggcccatgtaggcggg
gatgtagggtttgttggcaatcgtcggagtttcaggcagactgtttgccgccactggctg
cggtcactgtgtatgaagggtgaagcctgcggcttccttcatcagtatgataaatctcga
atgccaatctgtcggttttttagactgtatggggagtgccgtgaacaggactgtgtttat
aagcacacaattgaggatatcaaggaatgcaacatgtacaaattggggttttgtccaaat
ggtcctgattgtcgatatagacatgcaaagttgcctggacctccaccaccagtggaagaa
gttcttcagaaaattcagcatctggcgtccaacaactatggttactcaaacaggttttac
caaaaccggaatgctaattattcaacacaggctgagaaatctcaagcttcacaaggacag
aatggaatgggtcttgctgtgaaatctacagcagctgagacacccattatacaacagatc
cagcctcatcaacaacaagttttacagactcaacaacagggtggcccaactcaaacacaa
attcatcccaatggccagcaaaatcaaacagatagaactgcagtagtcctgcctcaagga
acctctaggtactttatagttaaaagctgcaaccgtgagaatcttgaattgtcagtacaa
caaggagtttgggcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactct
gtggaaaatgtcattctgatattttccgttaatcggactagacattttcagggttgtgca
aagatgacatctagaattggtggcgctgctaaaggaggaaattggaagcatgaacatgga
actgcccattatggacgtaatttttcagtaaaatggttaaagctgtgtgaattgtccttc
cagaaaactcaccacttgaggaatccatacaatgagaacttaccagtgaagataagcaga
gattgtcaagaattagaaccctctgttggtgagcagttggcttctttactttatcttgaa
ccagatagcgaacttatggcaatctcacttgcagcagaatccaagcgacaggaagaaaag
gcgaagggagtgaaccctgacaatgggaatgataatccagatattgtaccatttgaagac
aatgaagaagaggaagatgaagaaagtgaggacgaggatgaaagctttgatcaaggtttc
ggaccagctgctcttggcagaggaagggggaggggaattgtgtggcctccaataatgcct
ttaggacatgggcccagacctcttcctgggatgcggggcttccctccgggcatgatgggt
gatggattttcttatggagctatgacacctgatggtttcccaatgcctgatcattttgga
atgggtcccagacctttcggtccatacggcccgcgattttcaaatgatatgatgtttcat
ggccgccctccagctggtggatttgggatgatgatgggtcccggaaggccccctttcatg
ggcgggatgggtcccggagcgacaggcccacccagagctggtcgagcagttggtatgcat
ccatcatttgttccaccctcatctcagccttctcaaaatccttataggcctaaaagagaa
cagagagctccagttcatgacaggaatgatagattcagctccggttcagatcaaggtaag
ggtcaggagatggcgggctcagttggcggaccagatggagtaaattatccccaaagaggg
aaacccgaacaagatgcccagtttggtgctggaaacagcttcaaaaatgatgaaagtgaa
agtgaggatgaagcaccaagaagatcaagacatggggatggaaagaagaaaaggcgggat
actgatgatgatgctgcaactgcttcagaaaaatag
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