KEGG   Nicrophorus vespilloides: 108562145Help
Entry
108562145         CDS       T04922                                 

Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nvl  Nicrophorus vespilloides
Pathway
nvl03030  DNA replication
nvl03410  Base excision repair
nvl03420  Nucleotide excision repair
nvl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nvl00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    108562145
   03410 Base excision repair
    108562145
   03420 Nucleotide excision repair
    108562145
   03430 Mismatch repair
    108562145
Enzymes [BR:nvl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108562145
    6.5.1.6  DNA ligase (ATP or NAD+)
     108562145
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108562145
DNA replication proteins [BR:nvl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    108562145
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     108562145
DNA repair and recombination proteins [BR:nvl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108562145
   NER (nucleotide excision repair)
    Other NER factors
     108562145
   MMR (mismatch exicision repair)
    Other MMR factors
     108562145
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 108562145
NCBI-ProteinID: XP_017775852
LinkDB All DBs
Position
Unknown
AA seq 867 aa AA seqDB search
MAQRSITSFFIRVTPKDSTTSYGASIAKVSSHQLKRTRESSSVDDNEENMPTKNTQKELT
NKKNSAKRQKTVKVLPDSVQNIIKTTEKDVDNNSSDSNLSIKNAPLRSEKKKNKHRLINS
DSSEDEVLIKKESPKKEKKLEVFFKKEAENLKAKKKKQHVIESDYSSDEVESPKKQETKD
VVVKKEPEVEKKSMLDFFKGNSKTKTDTNVSGVDYNPTLGKYDPIECATWQHGQKVPYMA
LARSLEEIENVSARLKMIEILSNFFRSVLVLTPDDLLPSVYLCLNKLAPAYEGIELGIAE
TSLMKAIAQSTGRTVAQIKADAQEVGDLGIVAERSKSNQRMIFQPAPLYVRGVFDKLKDI
AKMTGHSSQTKKVEKIQSMFVACKHSEARFLIRSLAGKLRIGLAEQSVLQALALACTLTP
PNQSYPPKKLNVSKGMSTESFKNLQEEMTLIIKTTYCECPNYDLMIPVLLKEGIEKLPEY
CKLTPGIPLKPMLAHPTKGVHEVLQRFDGLRFTCEWKYDGERAQIHIHDNGDVSIYSRNQ
ENNTSKYPDIISRLVHCKTDNVKSCILDCEAVAWDKEKKQILPFQILSTRKRKDANEEDI
KVQVCVFMFDLLFLNGERLVTKPFSYRRELLKENFKEYEGEWCFATSMDTKTMEEVQEFL
DESVKGNCEGLMVKTLDEDATYEIAKRSRNWLKLKKDYLEGVGDTLDVVVIGGYIGKGKR
TGTYGGFLLACYDADNEEYQSICKIGTGFTDEYLQTHTDFLKSHIISEPKSYYRYDSSHE
PDHWFDAVQVWEIKCADLSLSPVHRAAMGIVDPEKGISLRFPRFIRIRDDKNVEDATSAQ
QVADMYSNQDQIKNQQGGGKSLEEDFY
NT seq 2604 nt NT seq  +upstreamnt  +downstreamnt
atggcacaaaggagcataacgtccttctttattagggtcacaccaaaggattcaacaaca
agttatggagcttcaattgctaaggtatcttcacaccaattaaagagaactagagaatcc
agcagtgtagatgacaatgaagaaaatatgcctactaagaatacccaaaaagaattaaca
aataaaaagaattcagcaaaaagacaaaaaactgtgaaagtattgcctgattcagttcaa
aatattattaaaactactgaaaaagatgtagacaataacagcagtgatagtaatttgtct
attaaaaatgctccacttagatctgaaaagaagaaaaacaagcatcgtctcattaactct
gatagcagtgaagatgaagttctcattaaaaaagagagtccaaagaaggaaaagaaattg
gaagttttctttaagaaagaagctgaaaatttaaaagcaaagaagaagaagcaacatgta
attgaatctgactacagttcagatgaagttgagagtcctaaaaaacaagaaacaaaggat
gttgtggttaagaaagaacctgaagttgaaaagaaatccatgcttgattttttcaaagga
aattcaaaaacaaaaactgatactaatgttagtggagttgattataatccaacattggga
aaatatgatccaattgaatgtgctacatggcaacatggacaaaaggtaccttatatggcg
ttagctaggtccctggaagagatagaaaacgtgtcagctcgattaaagatgattgagatc
ttaagtaatttcttccgatctgttctggttttgaccccagatgacttattgccgagtgtc
tacctatgtttgaacaaattagccccagcatacgagggaattgaattgggaattgccgaa
acatcactgatgaaagcaatagcgcagagtactggaagaactgtggcacaaataaaagcg
gatgcccaagaagtgggtgatcttggaatcgtggccgaacgctcaaaaagtaatcagcgt
atgatatttcaaccggctccgctgtatgttcgtggtgtcttcgacaagctcaaagatata
gcgaaaatgaccggacattcttcacaaactaaaaaagtagagaaaatccaatcgatgttt
gtagcttgtaaacattccgaagcacggtttttaatccgatcgttggcgggaaagcttagg
ataggcttagcggaacaatctgtattgcaagcgttggctctggcctgtacgttgacgcca
ccgaatcaatcttatccacctaaaaaattgaatgtttctaaaggaatgtccacagaatct
ttcaagaatttacaagaggaaatgactttgataattaaaacaacctattgcgaatgtcca
aattatgatctgatgatacctgtacttctcaaagagggtatcgaaaagcttcccgaatac
tgcaagctcactccgggtattccactcaaacctatgttagcacatccgacaaaaggcgta
cacgaagtcctccagcgattcgatggtctcagattcacatgcgaatggaaatatgatgga
gaaagagcgcagattcacatacatgataatggtgatgttagcatttatagtaggaatcaa
gagaacaatacttcaaaatatcccgatataatttctcgtttggtgcactgtaagactgat
aatgttaagtcctgcattttggattgcgaagctgtcgcgtgggataaggaaaagaaacaa
atattgccattccaaatattgagtacgcggaaacggaaggatgcgaatgaagaggatata
aaagttcaagtttgcgtattcatgtttgatttgctattcctaaatggagaacggttagtt
acgaaaccattctcgtataggcgtgaattgctgaaagagaatttcaaagagtacgagggt
gagtggtgctttgccactagtatggacaccaagacgatggaagaggttcaagagttcttg
gatgagagcgtcaaaggtaattgtgaaggtttgatggtaaagacgctggacgaggatgcc
acatatgaaattgccaagaggtcgcggaattggttaaagttgaagaaagattacctggag
ggcgttggagatacgctagatgtagtcgtcattggtggatatattggtaaaggaaaacgg
actggaacttacggcggttttctattggcttgctacgacgccgataacgaagaataccaa
agcatttgcaagattggaaccggttttactgatgaatatcttcaaacgcatacagatttc
ttgaagagtcatataatttctgaaccgaaatcgtactatcgctacgattcatctcacgag
cctgaccattggttcgacgctgttcaagtgtgggagataaaatgtgcagatctctccctc
tcgccagtccatcgagcagcaatgggcatagttgatcctgaaaagggtatttcccttagg
tttccacgtttcatcaggattcgagacgacaagaacgtagaagatgccacctcagcgcag
caagtggccgacatgtactccaaccaggaccaaattaaaaatcaacaaggcggcgggaaa
tcgctggaggaagacttttattag

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