Ornithorhynchus anatinus (platypus): 100078516
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Entry
100078516 CDS
T01045
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain
KO
K06236
collagen type I alpha
Organism
oaa
Ornithorhynchus anatinus (platypus)
Pathway
oaa04151
PI3K-Akt signaling pathway
oaa04510
Focal adhesion
oaa04512
ECM-receptor interaction
oaa04611
Platelet activation
oaa04820
Cytoskeleton in muscle cells
oaa04926
Relaxin signaling pathway
oaa04933
AGE-RAGE signaling pathway in diabetic complications
oaa04974
Protein digestion and absorption
oaa05146
Amoebiasis
oaa05165
Human papillomavirus infection
oaa05205
Proteoglycans in cancer
oaa05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100078516 (COL27A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100078516 (COL27A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100078516 (COL27A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100078516 (COL27A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100078516 (COL27A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100078516 (COL27A1)
09154 Digestive system
04974 Protein digestion and absorption
100078516 (COL27A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100078516 (COL27A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100078516 (COL27A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100078516 (COL27A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100078516 (COL27A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100078516 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oaa00536
]
100078516 (COL27A1)
Glycosaminoglycan binding proteins [BR:
oaa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100078516 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100078516
NCBI-ProteinID:
XP_028918676
LinkDB
All DBs
Position
4:31443382..31685323
Genome browser
AA seq
1944 aa
AA seq
DB search
MEPESAPVSRFRVAAPRGGIFFLWIVFCSTYCLDFTQGVPEDVDVLQQLGLGRKPKAGGS
PLASHPVPQGVIPFQSGVIFTQRARVDAPTGTVIPTAFGTDLALVLSLRSHRVNNAFLFA
IKSGRKKLQLGVQFIPGKIAVYVGQRRSVHFDYEVHDGQWHHLAIDIRGRAVTLFTSCGK
RRVHADLHFKKDTALDPEGSFLLGKMNQHSTPFEGAVCQFDIYPSAQAAHNYCKYLKQQC
RQADTYRPHLPLLEPLFPRDPSTAARPGLQTDLWLPSLRNLTTVTSRPPVVHADLARPQP
TPRPSRGTAVPGSVGQPPARRPSRMTTTAPRPRAGTSLALTRTSPTRPGSTRVGLVRAAS
PTPRPVPRATNAKSSKTPIPASKPPGPRPARSSTKPPATLLRMAPPPSGATSGQAARSGP
RPAPTPHPATKSIATSARSTSKPVPDPTAPLPGKPASPTSHAGPPSASVVPRPLSTPGTN
LPPPTARTAPLVSSTRSTRTFPPILRTTAGGPRAGPRKTPLPATLPVLPGSAKMPPPAAK
PSPPASPASWASTLHPTVRPVLPTSAPQTLLSPPTPDWGLPARRGPTSSKKKVTGQKAAK
KAHLETTPKRVPPTKPRQKKTPADAPGDLHLTPLLQSLANLTGRAGPKPSLPRRRAPVPS
AAHPTSSPPHPFPRTSGLDPRGATPVPASDYLLFDPIGPTLFPFLLGPPGQKGDTGAVGP
PGLPGLPGPPGKRGPRGSPGPHGNPGRPGPPGAKGHKGDPGRSPGKAYNGEKGNAGLPGL
TGQLGPVGRKGQKGYPGPSGHPGDQGEPGPAGSPGAKGYPGRQGLPGAIGDPGPKGSRGY
IGLPGLFGLPGSDGERGVPGVPGQRGKMGRPGFPGDFGERGPPGTDGNPGELGAPGPPGV
PGLIGDMGLLGPIGYPGPKGLKGLMGNFGEHGLKGDKGDQGLPGVPGDIGFQGDKGSQGM
VGAPGVRGKPGPPGKSGDKGPAGFPGPPGPEGFPGDIGPPGENGPEGTKGKPGARGLPGP
RGQSGQEGDEGPSGPPGSPGPEGHPGRKGFPGRPGPNGLKGEPGNPGRPGKVGEQGLMGF
IGLVGEPGIVGEKGNRGPMGPPGVPGVKGSMGHPGTTGRTGDPGDPGNSGPPGVRGSPGM
RGVKGRRGARGPDGPTGEPGSRGVKGPQGTQGKQGLTGQQGKAGERGETGPRGFPGIQGP
SGPPGAKGIPGEPGPPGPQGLSGPLGEMGHKGPPGALGEPGPPGEPGMKGDFGPLGIPGE
QGLIGQRGETGLEGDSGQPGPPGLKGDKGEPGPEGEKGEKGKEGLKGMEGPPGLPGITGV
RGPEGKPGKQGEKGRTGPKGAKGYQGHLGETGAPGGPGPTGTQGPKGSRGTLGPTGAPGR
MGAQGEPGLPGYDGHKGFLGPIGPPGPKGEKGEQGDDGKTEGPPGPPGDRGPVGDRGDRG
EHGEPGYPGQEGLVGSRGKAGQQGLPGHPGPPGQPGPKGSKGEEGPKGKQGKRGEAGSRG
MQGPVGHPGPRGVVGRQGQEGLPGPDGIPGRDGRAGPQGEQGEDGEVGVMGPPGKRGNPG
VGGLPGAQGPPGFKGENGLPGPPGPTGKRGTEGGTGLPGSQGEPGSKGRPGDFGEMGFPG
IAGLFGPKGPPGDLGFKGIQGPRGPPGLMGQEGVIGPLGILGPTGLPGPKGDEGSRGETG
LQGPRGPPGPRGRPGPPGPPGIPVPFQQDDLGTAFQTWLDSSNGGVLRTEGSSHSDLLVL
DQGGEIFKTLHYLSNLIQSIKKPLGTKENPARICRDLMNCEQKMADGKYWIDPNLGCSSD
TIEVTCNFTKGGQTCLKPITASKVEFAIGRVQMNFLHLLSSEVVQHLTIHCLDVSVWQEG
QGRPPSKKSLRFRAWNGQIYEAGGQFRPEVSVDDCKVQDGRWHQTRFTFRTQDPQQLPIV
SIYNLPPTTPGKQYRLEVGSVCFL
NT seq
5835 nt
NT seq
+upstream
nt +downstream
nt
atggagccggagtcagccccggtctccagattcagagttgcagcacccagggggggaatc
ttctttctctggattgtcttctgttctacctattgtctggatttcacccagggagttcct
gaagatgtggatgtcctccaacagctgggccttggcaggaagccaaaggcaggtggaagt
cccttggcatcccaccctgtcccccagggggtcatcccgttccaatcaggagtcatcttc
acccagcgggcccgggtggacgcccccactggcacggtcatccctactgcttttggcacc
gacctggccctggtcctgagcctccgctcccaccgagtcaacaatgccttcctgttcgcc
atcaagagcgggaggaagaagctgcagctgggagtgcagttcatccccggcaagatcgcc
gtctatgtgggccaacggcgctctgtgcactttgactacgaggtccacgatggccagtgg
catcacctggccattgatatccggggccgagcggtcaccttatttacttcttgtgggaag
cgccgagtacatgcagatctgcattttaaaaaagacacggcactagaccccgaggggtcg
ttcctcctcgggaaaatgaaccagcactcgaccccattcgagggcgccgtgtgccagttt
gatatctatccctctgcccaggcagctcataattactgtaaatacctgaaacaacagtgc
cgacaggcagacacctacaggccccatctgcccctactcgagcccctctttcccagagat
cccagcacggcagcgcggccgggacttcagaccgacctctggctgccgagtctgaggaac
ctgaccactgtgacgtcgaggccgccggtggtccacgctgacctcgcccgcccccagcca
acccccagaccctcccggggcacggcggtccccgggtcggtgggacagccacctgcccgc
cggccctcgcggatgaccacgacagcccctcggccccgggcaggcaccagcttggcccta
acacgaacctctcccaccaggccggggagcactagggttggcttggtgagagctgcctct
cccactcccaggccagtgccgcgggcaaccaatgccaagtcaagcaagactcctattcca
gccagcaaacccccagggcccagaccggctcgcagctctaccaaaccccctgctaccctg
ctcagaatggcaccgcccccctctggcgccacctcaggtcaggcggcccgctctgggcct
cggccggccccgaccccccaccccgccaccaagtccatcgccacctctgccaggagcacc
tccaagcctgtcccagaccccactgcccccctccctgggaagccagcgtccccgacttcc
catgctggcccacccagtgcctccgtagtgcccaggcctctgagcaccccaggaaccaac
ctcccaccccccactgccaggacagctcccctggtctcgagcactcgttccacacggaca
ttcccacccattctcaggacaacggcaggaggcccccgggctggtcccaggaaaacacct
cttcccgccaccttgccagtcctgcctggctcagccaaaatgccccctccagctgccaag
ccatcaccccctgcctcccctgccagctgggccagcaccctccaccccaccgtcagaccg
gtgctccctacctctgcaccccaaactctcctgagccctcctacccccgactggggcctg
cctgcccgccggggccccaccagctccaagaagaaggtgacagggcagaaggctgccaag
aaagcccacctagagacgacccccaaacgagtccctcccaccaagccacggcagaagaag
accccagcagacgccccaggtgacctccatctcaccccgctgctgcagagcttggccaac
ctaacgggtcgggctgggcccaagccatccctacccagaaggagagccccagtgccctcc
gcggcccaccccacctccagcccaccacatccattccccaggaccagtggcctggacccc
aggggagccactcctgtcccagccagcgactacctgctctttgatcccatcgggccgacc
ctcttcccgttcctgctgggacccccaggccagaaaggagacaccggagctgtgggcccc
cctggacttcctgggctgcctggaccaccgggaaagagaggcccccggggttctcctggc
cctcacggaaaccctggtcgccccggcccccctggtgctaaaggccacaaaggggatcct
ggaaggtcacctggaaaggcctacaatggggaaaagggaaatgcaggcttacctggattg
acagggcagctgggaccagttggtcggaaggggcagaagggctacccgggaccatcaggg
catcccggagaccagggggagccaggaccagcgggaagtccgggtgccaaaggttatcct
ggcaggcagggattacctggagccataggagacccaggacccaaaggcagccgggggtat
attggtctccccggcctgttcggcctgccaggatccgacggagaacgaggtgtacccgga
gtgcctggccagaggggcaagatgggtaggccgggcttcccaggagacttcggggaaaga
ggaccccctggaacggatggcaaccccggtgaactgggtgccccaggcccccctggtgtt
cctgggctcattggtgacatgggattgttggggccaattgggtacccgggacccaaagga
ttgaagggactgatgggaaacttcggagaacatggactgaaaggtgataagggtgaccaa
gggctaccaggggttcccggagatatcggattccaaggagacaagggtagccagggcatg
gtgggggcaccgggtgttcgagggaagccagggcctcctggtaagtctggtgacaaagga
cctgctgggtttcctggacctcctggacctgagggtttcccgggagacattggaccccca
ggtgaaaacggtccagaaggcaccaagggtaagccaggagcccgaggtttaccgggacca
agaggacagtccggccaggagggagatgaaggaccatcggggcccccgggatcacctggc
ccagagggccaccctggacgaaaagggtttcccggaaggcctggacccaacggcctaaag
ggggagccaggaaatccaggccgacctggaaaagtaggggaacagggtttgatgggattt
atcggtcttgtaggggagccaggaatcgtgggagagaagggtaaccgagggcccatggga
ccacccggtgtgcctggagttaaggggtcgatgggacaccctgggacaacaggcagaact
ggagaccccggagatcctggaaattcaggtcctcctggagttcgtgggtctcctgggatg
agaggggtgaaaggtcgccggggggcccgagggccagacggaccgaccggggagccgggg
tcgcggggtgtgaagggaccgcagggaacccagggcaaacagggtctaaccggacagcag
ggcaaggcaggagagcgaggagagacgggacctcgtggcttccctggtatccagggtcca
tccggccctcccggggctaagggaattcctggggaaccgggccccccaggaccccaggga
ttgtctggccctttgggagagatggggcataagggccctcccggtgcattaggagagcct
ggccctcctggggaaccagggatgaagggtgattttggaccattgggcattcccggtgaa
caaggtctgattggccagaggggagaaactgggctggaaggagacagtggccaacctgga
cctcctggattgaagggagacaagggagagccaggccctgaaggcgagaaaggagagaaa
ggcaaagaggggctgaagggcatggagggcccccctggacttcccggaatcacaggtgtc
cgtggtcccgaaggcaaaccaggcaagcaaggtgaaaagggccggacaggaccaaagggc
gccaaggggtatcaagggcacctaggtgaaactggcgctcctggaggacccgggccaact
ggcacacaaggccctaaaggctcccgaggtaccctgggaccgacgggagctccagggcgg
atgggagcccaaggagaaccaggattgcccggttatgatggacacaaaggatttctggga
cccatcggccccccaggacccaaaggcgagaagggtgaacaaggagatgacgggaagaca
gagggtccccctggacctcctggagacaggggtccggttggtgatcgaggagaccgtgga
gagcacggggagccgggttacccaggccaggaaggccttgtaggaagccgaggcaaagca
ggccagcaaggtcttcccgggcaccctggaccaccaggccaaccaggacccaagggatcc
aaaggcgaagagggcccgaaagggaagcaaggcaagcgtggggaagccggcagtcggggg
atgcagggccccgtggggcatcccgggccacggggcgtggtggggagacaaggccaagaa
gggctccccggaccagatgggattcctggcagggacggccgagcgggaccgcagggggaa
cagggagaagacggggaagttggtgtcatgggtcctcctgggaagagagggaatcccggc
gtgggcggcctgcccggagctcagggacccccaggattcaagggtgaaaacgggttaccc
gggccaccgggtcccacaggaaagcgagggacagagggaggaacggggcttcccggaagc
cagggggagccaggatccaagggccggccgggggactttggcgagatgggcttcccgggg
atcgcaggcctgtttggccccaaggggcctccaggagatcttggtttcaaaggaatccag
ggccccaggggtcccccaggcctgatgggacaagaaggtgtcatcggcccgctggggatc
ctggggcctactggactcccgggcccaaaaggggatgaggggagtcgaggtgaaacggga
cttcaaggcccaaggggtcccccaggtccccgaggacgccctggaccgccgggccctcca
gggattcctgttccatttcaacaagatgacctcgggacagctttccagacgtggctagac
tcctcaaacggtggcgtgctcaggacagagggctcttcccattctgatctgctggtgttg
gaccagggaggggagatctttaagaccctacactacctcagcaacctcatccagagcatc
aagaagccactgggcaccaaggagaaccctgctcgcatctgtcgagacctcatgaactgt
gagcagaagatggctgacggcaaatactggatcgaccccaaccttggctgttcttcagac
accatcgaagtgacctgtaacttcaccaaaggaggtcaaacctgtctaaaacccatcact
gcctcaaaggtggagttcgccatcggccgggtccagatgaacttcctacacctcctgagc
tccgaagtggtccagcacctgaccatccactgcctcgatgtgtccgtgtggcaggaaggg
caaggccggccacccagcaagaagtctctgcgcttccgggcctggaacggacaaatctat
gaggctggaggccagttccgaccagaggtctctgtggatgactgcaaggttcaggacgga
cgctggcaccaaacccgcttcacgttccggacacaggacccccagcagctgccaatcgtc
agcatctacaatctgccgcccaccaccccggggaagcagtaccgcctggaagtcgggtct
gtgtgcttcctctga
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