Oscillatoria acuminata: Oscil6304_5990
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Entry
Oscil6304_5990 CDS
T02368
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oac
Oscillatoria acuminata
Pathway
oac03030
DNA replication
oac03410
Base excision repair
oac03420
Nucleotide excision repair
oac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Oscil6304_5990
03410 Base excision repair
Oscil6304_5990
03420 Nucleotide excision repair
Oscil6304_5990
03430 Mismatch repair
Oscil6304_5990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oac03032
]
Oscil6304_5990
03400 DNA repair and recombination proteins [BR:
oac03400
]
Oscil6304_5990
Enzymes [BR:
oac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Oscil6304_5990
DNA replication proteins [BR:
oac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Oscil6304_5990
DNA repair and recombination proteins [BR:
oac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Oscil6304_5990
NER (nucleotide excision repair)
GGR (global genome repair) factors
Oscil6304_5990
MMR (mismatch excision repair)
DNA ligase
Oscil6304_5990
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Oscil6304_5990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HHH_2
DNA_ligase_OB
HHH_5
ATG16
Crescentin
DUF4201
DUF1664
TPR_MLP1_2
Filament
TX13_rpt
CENP-F_leu_zip
CCDC93_CC
MscS_porin
Rootletin
DUF745
IFT57
DNA_ligase_ZBD
CALCOCO1
APG6_N
EzrA
DUF4763
Fez1
CENP-H
HAP1_N
FPP
AAA_13
FAP
DUF3584
Auto_anti-p27
YabA
DUF724
DAHL
ALIX_LYPXL_bnd
zf-ribbon_3
WEMBL
Leu_zip
Golgin_A5
ATG17_like
HMMR_C
Motif
Other DBs
NCBI-ProteinID:
AFY85452
UniProt:
K9TRI6
LinkDB
All DBs
Position
7671643..7674288
Genome browser
AA seq
881 aa
AA seq
DB search
MFYARLNSLASIPDHQRMILKVNPLKKRIRGGKKEVTTDITTKEVRAQIEAIKIKVERNG
HLTPIAQIAPVEVEGTKIEYATFLGSDRFTELNPQIGDTLLLCHGGTDKMAEVVGVIAEE
RSSGSQPFKMPTHCPECGSPVIRTSDDEISCLNSSCAPILPYSLLNWASRDAMEISGLGE
KLAYQLIEHGLVKSIADLYELNADQLITLERMGKKSAKNLLKAIAKSKSLPWSRVLASLG
IRHVGRATAQMLTQEFATVGNLAKAEITELEAIERISPEIAQSVYHWFRIQANQTLIERL
SAAGLQLPSVALPEILDVPVAPETATQQVQPSPAPLDKEPVPMPAPSTSKTPSHAESPLD
ASAQELQTATERNAQLQSELEQATQHSGQLRSELEEIRTTLERAEQQTAQLQSELAESRQ
QLTQANQSESLESELAQKNTQLTQAQEQTAQLNAQLQEIQSALAASTRQTEELQTELEQS
KQHSGELDSQLNQLRTELEQSKQHSGELDSQLTQLRTELEQSKQHSGELDSQLTQLRTEL
EQSKQHSGELDSQLTQVRTELEQSKQHSGELDSQLTQVRTELEQSKQHSEELDSQLTQLR
TELEQSKQHSGELDSQLTQVRTELEQSKQHSGELDSQLTEVRTELEQSKQHSGELDSQLT
QVRTELEQSKQHSGELDSQLTQVRTELEQSKQHSGELDSQLTEVRSQLAQVQQERSQIQS
QLEERGERLQQLEGEKQDLQQQLSETRTQLLGVEEMRSHLQTELAQIKAENERAQQQRSD
LETQLAKSHAAQSQLQGDLNETQEKLQRLLHDQSHSQSQVTQANSERSDVLSQLEAANQA
RSQLESQLALVRSQTPLLKTGVVLAFLFGSLIAWFSALAIY
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
ttgttctatgccagacttaatagtttagcgtcgatccctgatcaccagaggatgatcctc
aaggttaacccattaaagaaaaggattagaggaggtaaaaaagaagtgacgaccgatatt
accacaaaagaagtccgagcgcagatcgaagccataaaaattaaagttgaacgcaacggc
catttgaccccgatcgcccagattgcacccgtcgaggtagagggtactaaaattgagtac
gccaccttcctcggcagcgatcgcttcacggagttaaacccccaaatcggcgataccctc
ctgctgtgtcatggaggaaccgataaaatggcggaagtggtcggggtgatcgcagaagaa
cgctcttccggcagtcaaccctttaaaatgcccacccactgcccagaatgcggatccccg
gtcatccggaccagcgatgatgagatcagttgccttaattcctcctgtgctcccattctt
ccctacagcctgctcaattgggccagtcgagatgcaatggaaattagcggattgggagaa
aaactggcctaccaattgattgaacatggactggttaaatccattgccgacttgtacgaa
ctcaatgctgaccaactgatcaccctggaacggatggggaaaaaatcggcgaaaaacctg
ctcaaggcgatcgctaaatccaaatccctcccttggtccagagtcctcgccagtttgggt
atccgccacgtcggtcgtgccacggcgcagatgctcacccaggaatttgctacggtcgga
aacctcgccaaagctgaaatcaccgaactagaggctattgagcgcatcagtccggaaatc
gcccagtctgtctatcactggttccgaattcaagctaatcaaaccttaattgagcgctta
tccgctgctggattgcaactgccctcggtggcattacccgagatcctcgatgtccccgtc
gccccagaaaccgcgacccagcaggtccaaccctcccctgcacccctggacaaagaacct
gttcccatgcctgctccttctacctcaaaaaccccctctcatgcagagtccccattggat
gcctcggctcaagaattacaaaccgccactgaacgcaacgctcaattacaatcagagtta
gagcaagctactcagcattcgggtcaattgcgatcggagttagaggaaattcggaccacc
ctagaacgggccgaacaacaaactgcacaactccaatcggaattagcggaaagtcggcag
cagttgacacaggcgaatcaatctgaatctctggaatcggaactagctcaaaagaacacc
caactcacccaagctcaggagcaaacggctcaattaaatgctcagttacaggaaattcag
tccgcgttagcagcatctactcgccaaactgaagaactccaaactgagttagagcaatca
aaacagcattcaggggaattagactctcaactgaatcagttacgaactgagttagagcaa
tcaaaacagcattcaggggaattagactctcaactgactcagttacgcacggagttagag
caatcaaaacagcattcgggagaattagactctcaactgactcagttacgcacggagtta
gagcaatcaaaacagcattcgggggaactagactctcaactgactcaggtgcgaactgag
ttagagcaatcaaaacagcattcgggagaattagactctcaactgactcaggtgcgaact
gagttagagcaatcaaaacagcattcggaagaattagactctcaactgactcagttacgc
acggagttagagcaatcaaaacagcattcgggagaattagactctcaactgactcaggtg
cgaactgagttagagcaatcaaaacagcattcaggggaactagactctcaactgactgag
gtgcgaactgagttagagcaatcaaaacagcattcaggagaattagattctcaactgact
caagtgcgaactgagttagagcaatcaaaacagcattcaggagaattagattctcaactg
actcaggtgcgaactgagttagagcaatcaaaacagcattcaggggaactagactctcaa
ctgactgaggtgcgatcgcagttagcgcaagtgcaacaagagcgatcgcagattcaatcc
cagttagaggaacggggggaaagattacaacaactcgaaggggagaaacaggacttgcaa
cagcaactctctgaaacgcggacccagttattgggagtggaagagatgcgatcgcacttg
caaaccgaactcgctcaaatcaaggcagaaaacgagcgcgcacaacaacagcgatcggac
ttagagactcagcttgccaaatcccatgcagcacagtcccaactccagggggatttaaac
gaaacccaagaaaaattacagcgcctgttgcacgatcaatcccacagccaatcccaagtc
acccaagccaacagcgagcgatcggatgtactatcgcaattggaagctgctaaccaagcg
cgatcgcagctagaatcccaactcgccctcgtgcgatcgcaaacccccctgttaaaaaca
ggagtagttctagcattcctcttcgggtccttaattgcctggttctcagccttagccatt
tactaa
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