KEGG   Ochrobactrum anthropi ATCC 49188: Oant_4315Help
Entry
Oant_4315         CDS       T00568                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
oan  Ochrobactrum anthropi ATCC 49188
Pathway
oan03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Oant_4315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oan03400]
    Oant_4315
Enzymes [BR:oan01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Oant_4315
DNA repair and recombination proteins [BR:oan03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Oant_4315
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ABS17015
UniProt: A6X711
LinkDB All DBs
Position
2:complement(1741498..1744002)
Genome map
AA seq 834 aa AA seqDB search
MGQSLETYRRKRDFTLTNEPRGKSSRTKRELFVVQKHDARRLHYDFRLEMDGVLKSWAVT
RGPSLVPGEKRLAVHVEDHPLEYADFEGTIPKGKYGGGTVIVWDTGRWKSTADAHQQYKK
GHLEFELTGEKLKGRWHLIRMHGKPDEKRENWLLIKGEDEFSRNPDEPDILVEMPKSVKT
GRAIADVEHEAPGWSSKTGSINKKSNAQGDGGGANIKNAKKRPMPSFVKPELATLVSVAP
DGNRWLHEIKFDGYRIQAHIAGGKVALYSRGGLDWTEKFGQQIARDLVGTSVNEAIFDGE
IVVESQSGLSDFSALQEDLREGRSDRFVYYLFDLLHVDGKDLRQTPLVERKTLLEKLISA
SSSTLRFSEAFDADGAAVLKNACGLGLEGIVSKLREASYRSGRSNDWRKSKCIGRQEFVI
AGYVPSTVTRAAIGSLLLGVQDKKGLVPVGRVGTGFSVRIAKELYKRLQAMRQGGSPFAV
PLTADERRGAKFVTPLLVAEIEFRAWTADKRLRHASFRGVRDDKAAKDVIWEKQTMSPRI
SSKGPEEIDVKLTHPDRVYWPGEGVTKQGLADYYSAIWSSIEPFIVNRPLALLRCPTGID
GEHFFQRHAWKGLNEHIIEVQDPENKEEEPYISIRDFNGLIGLVQAATLEIHPWGSTLKN
WELPDTLTMDLDPGEGVPWSRVIEAAIETKERLEKLGLKTFVKTSGGKGLHVVAPLKPKV
DWDALKSFTKAIADQMAADSPDRYVSTISKAKRKGKILIDYLRNQRGMTAVAPYSPRARP
GAAVSMPLGWDEVTSAIGPAHFTIVNTPNRLAALNSDPWQDFRSAETPLPKLKK
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atgggacagtcactcgaaacctatcgcaggaaacgcgattttaccctgactaacgagccg
cgcggtaagtcttcgcgcacaaaacgcgagctctttgtcgtgcaaaaacatgatgctcgc
agactgcattatgattttcgccttgagatggatggcgtgctgaaaagttgggctgtgacg
cgaggtccaagccttgttcctggcgaaaagcgactggccgtgcatgtggaggaccatccg
cttgaatatgcggacttcgaaggcacgatccctaaaggcaagtacggtggtggtacagtt
atcgtctgggatacagggcgttggaaatccactgctgatgcacatcagcaatacaagaaa
gggcatcttgagttcgagctcacaggggaaaaactcaaaggtcgctggcatttgatccgg
atgcacggaaagccagacgagaagcgagagaattggctcctcatcaagggggaggacgaa
ttttccagaaatcctgatgaacctgacattcttgtagagatgccgaaatcggtaaaaacc
ggccgcgccatcgccgatgtcgaacacgaagcgccaggatggtcatcgaaaactggttcg
atcaacaaaaagtcgaacgctcaaggggatggtgggggcgcaaatatcaaaaatgcgaag
aagcgaccgatgccgagtttcgtcaaacctgagctcgctacgctcgtatcagttgctcca
gatggaaaccgctggcttcacgagatcaagttcgacggttatcgcatccaggctcatatt
gcggggggcaaggtcgccctttattcgcgtgggggactggattggactgaaaaatttggc
cagcagattgccagagatcttgttggtacgagcgtgaacgaagccatatttgatggggag
atcgttgtcgaaagccagtcgggactgtctgacttttcagctttgcaagaggatctaagg
gagggacgttctgatcgattcgtttattaccttttcgatctactgcatgttgatggcaaa
gaccttcgccagacgcctctggttgagcgcaaaacgctgctcgaaaaattaatttctgca
tcatcgtcaacacttcgcttcagcgaggcctttgatgccgatggggctgcggtactgaag
aatgcctgcggacttggccttgagggcattgtgtcgaagctcagggaggcatcttataga
agcggtcgcagcaacgattggcgtaagtcgaaatgcattggacgacaggaattcgtcatt
gcaggctatgttccgtcgacggtaacgcgagcggcaatcggttcgctccttttgggtgta
caggataagaaggggctggttcccgtaggccgggtgggaacaggcttttcggtcaggatt
gcaaaagaactttacaaacggctgcaagccatgcggcagggagggagcccattcgccgtg
ccgctgacggcagatgaaaggcgcggagccaagttcgttacaccgctgctggtagcggaa
atcgaatttcgtgcctggactgccgataagcgattgcgtcacgcgtccttcaggggggta
cgagacgataaggctgccaaggacgtcatatgggagaagcaaaccatgtcaccccgtatt
tccagtaaaggccccgaggagatcgacgtgaagctcacacatcccgaccgggtttactgg
ccgggcgaaggtgtcacaaaacagggtctcgcagattattattccgctatctggtccagc
atcgaacctttcatcgtcaaccgccccctggcattgttacgctgcccaaccggaattgac
ggagaacacttctttcaaaggcacgcgtggaaggggttgaatgaacatattatcgaagtt
caagatccagagaacaaggaagaggagccttatatcagcattcgggacttcaacgggctg
atcggtctggtgcaagccgcgacgctggaaattcacccctggggttctacgctcaaaaat
tgggagctaccggatacgttgacaatggatctcgatccgggtgagggcgttccatggtcg
cgcgtgatcgaagccgcaatcgagaccaaggaacgtctggaaaaactcggattgaagacg
tttgttaaaacgtccggtggcaagggactacatgtggtcgcgccattgaagccgaaggtc
gactgggacgccctcaagagctttacaaaggctattgccgaccagatggctgcagacagt
cctgatcgctatgtttcgacgatttccaaggccaagcgcaaaggcaaaattcttattgat
tatctgcgcaatcagcgcggcatgactgctgtagcaccctattcgccgcgggcacgtcct
ggtgctgcagtttccatgccgcttgggtgggacgaagtgacgtcagcaataggccccgcc
cattttactattgtcaacacgccgaaccggctggccgcattgaatagcgatccctggcag
gattttcgcagcgcggaaacgccgctgcctaagctgaagaaatag

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