Octadecabacter arcticus: OA238_c02580
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Entry
OA238_c02580 CDS
T02539
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oar
Octadecabacter arcticus
Pathway
oar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OA238_c02580 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oar03021
]
OA238_c02580 (rpoC)
03400 DNA repair and recombination proteins [BR:
oar03400
]
OA238_c02580 (rpoC)
Enzymes [BR:
oar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OA238_c02580 (rpoC)
Transcription machinery [BR:
oar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OA238_c02580 (rpoC)
DNA repair and recombination proteins [BR:
oar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OA238_c02580 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AGI70526
UniProt:
M9RJH8
LinkDB
All DBs
Position
260271..264524
Genome browser
AA seq
1417 aa
AA seq
DB search
MNQELTNNPFNPITPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLQYGALMTEEEFLDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEGEADSLREDLKVATGELKPKKIIKRLKIVESFLESGNRPEWM
ILTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LECRVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIEREGMKGEGMVFSNIEEVEHAL
QAGEVHLHAKIQARLPQIDTEGNEVFERFETTPGRVRLGALLPTNNKAPFSLVNRLLRKK
EVQQIIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWPLVEETRG
LVKDYEQQYMDGLITQGEKYNKVVDAWSKANDKVTEAMMTTISTTARNADGSESEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREVDCGTERAITAEAAVNDGEVVSSLSDRVLGRV
SADDVLKPGTEEVLVKAGELIDERSADIIETSGVAKMRIRSPLTCEAEDGVCAMCYGRDL
SRGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASVSGIVELRNEQ
ILENEMGEQVVMGRNMVLAIMDENGEERANHKVGYGSKVFVKAGSKITRGDKMFEWDPYT
LPIIAEKAGMVKFVDLINGIAIREDTDDATGMTQRIVTDWRSAPKGNELKPEIMILNSNG
EPVRNDAGNPVTYPMSVDAVLSIEDGQDIQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESAEDADIKVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGDTTLLKGENVDKAEFDEANAKSLARKGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQQVSKIATDRDNVVIQARRE
EAEAAAALAAPEPVSEDVIGGDVFDTMIADTPENREE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttacaaacaacccgtttaacccgatcacaccggcgaaaacgtttgac
gaaatcaaggtctctctggcctcccccgaacggatcctgtcgtggtccttcggtgagatc
aagaagcccgaaaccatcaactaccgcacgttcaaaccagaacgtgacggcctgttttgt
gcgcgtatttttggaccgatcaaagactatgaatgtctgtgcggcaaatataagcggatg
aaatatcgcggcgtcgtctgcgaaaaatgtggtgtggaagtcacgctgcaaaaagtgcgt
cgcgaacgcatgggccacattgaactggcagcgccggttgcacacatctggttcctcaag
tcattgccaagccgtatcggcctgatgctggacatgaccctgcgcgacctcgaacgtatt
ctgtattttgagaactacgtcgtgatcgaaccgggtctcacagacctgcaatacggtgcc
ctgatgaccgaggaagaattccttgacgcgcaggacgcctacggcatggacgcctttact
gccaacatcggtgctgaagcgatccgcgaaatgctggcagcgatcgaccttgaaggcgaa
gctgactctctgcgtgaagacctgaaggtcgctaccggtgagctgaagccaaagaagatc
atcaagcgtctcaagattgtcgaaagcttcctcgaatccggcaaccgtccggaatggatg
atcctgacggtcgttcccgtgatcccgccagagctgcgcccgctggtgccgctggatggt
ggccgtttcgcgacgtccgacctcaacgatctgtatcgccgcgtgatcaaccgtaacaac
cgtctgaagcgtttgatcgaactgcgcgcacctgacatcatcgtgcgcaacgaaaagcgc
atgttgcaggaatccgtcgacgcattgtttgacaacggccgtcgtggccgcgtgatcacg
ggtgccaataagcgtccgttgaaatcgctgtctgacatgctgaagggtaagcagggtcgc
ttccgtcaaaaccttttgggtaagcgcgtcgacttctctggtcgctcggtcatcgtaacc
ggtcccgaactcaaactacaccagtgtggtttgccgaaaaagatggcgctcgaactgttc
aagccgttcatctattcgcgcctcgaagcgaagggtctgtcttcgaccgtgaagcaagcc
aaaaagctggtcgaaaaagagcgtccagaagtctgggacatcctggatgaagtcatccgc
gaacaccccgttatgctgaaccgtgcgccaacgttgcaccgtcttggcattcaggcgttc
gaacctgttctgatcgaaggtaaggcgatccagctccacccgctcgtgtgttccgcgttt
aacgctgacttcgacggtgaccagatggctgtccacgtgccgctctcgcttgaggcgcag
ttggaatgtcgcgttcttatgatgtccaccaacaacgtgctgtcgcctgccaacggcgcg
ccaatcatcgtgccgtcccaggatatgatcctcggtctgtattacacgacgattgaacgt
gaaggcatgaagggcgaaggcatggtcttctccaacatcgaagaagtcgagcatgctttg
caggctggtgaagttcacctgcacgccaaaatccaagcgcggcttccgcagattgacacc
gaaggcaacgaagtgtttgaacgctttgaaaccactccgggtcgtgttcgtcttggcgcg
cttttgccaacgaacaacaaagcaccgttcagccttgtgaaccgtcttttgcgtaagaaa
gaagttcagcagatcatcgacacggtctatcggtattgcggacaaaaagaatccgttatc
ttctgtgaccagatcatgacgatgggcttccgcgaagcgttcaaagcgggtatttcgttc
ggtaaagacgacatggtcatccccgacaccaaatggccactggttgaagaaacccgcggt
ctggtgaaggactatgaacagcaatacatggacggcctgatcactcagggtgaaaagtac
aacaaagttgtggatgcttggtccaaggccaacgacaaggtcaccgaagcgatgatgaca
acgatttcgaccacggcgcgcaatgccgacgggtccgaatctgagccaaactcggtctac
atgatggcccactccggtgcgcgtggttctgtgacgcagatgaaacagctgggcggtatg
cgcggtctgatggcgaagccgaatggcgaaatcatcgaaacgccgatcatctcgaacttt
aaagaaggtctgacagttctggaatacttcaactccacccacggtgcccgtaagggtctg
tcggacacggcgttgaagactgcaaactccggttacctcacacgtcgtctggttgatgtt
gcgcaagactgtatcgtccgtgaggtcgattgcggaacggaacgtgcgatcactgcagaa
gcggccgtaaacgacggtgaagttgtatcgtcgttgtctgatcgtgtgcttggtcgtgtg
tctgccgatgacgtgcttaagccaggcacagaagaagtgctggtaaaagccggagagctg
atcgacgaacgctctgctgatatcatcgaaacatctggtgtcgccaagatgcgcatccgc
agcccgttgacgtgtgaggccgaagacggcgtctgcgcaatgtgttatggtcgtgacctc
tcacgcggtacacgggtcaacatcggcgaagctgtcggcatcatcgccgcgcagtccatc
ggtgaacctggtacacagctgacaatgcggacgttccacattggcggcgttgcccaaggt
ggtcagcagtcattccttgaagcatctgtcagcggtatcgtggagttgcgcaacgagcag
atcctcgaaaacgagatgggtgagcaggtagttatgggccggaatatggtcctcgcgatc
atggacgagaacggcgaggagcgtgcgaaccacaaggttggctacggttccaaagtgttc
gtcaaagctggttccaagattacccgtggtgacaagatgttcgaatgggatccctacact
ctgccgatcatcgcagagaaggcgggtatggttaagttcgtcgacctcatcaacggtatc
gcaattcgcgaagacaccgatgatgcgacaggcatgacccagcgtatcgtgaccgactgg
cgttccgcgccaaaaggcaacgagctgaagcccgagatcatgatcctgaactcaaatggt
gaacctgttcgcaacgatgcaggcaaccctgtgacctacccgatgtctgtcgacgcggtt
ctgtccattgaagacggtcaggatatccaagccggtgacgtcgttgcgcgtattccgcgt
gaaggcgccaagaccaaggacattacaggtggtcttccacgtgtggccgaattgtttgag
gcacgtcgccccaaggatcacgccatcatcgcggaaatcgacggttatgttcggttcggc
aaggattacaaaaacaagcgtcgtatcgcgattgagtccgcggaagatgcggacatcaaa
gtcgaatacatggtgcccaagggcaaacacatccctgtgcaggaaggcgacttcgtgcaa
aaaggcgactacatcatggacggcaatccagcgccgcatgatatcctcgccatcatgggt
gtcgaagcgcttgcggactacatgatcgacgaagtccaagacgtgtaccgtttgcaaggt
gtgaagattaacgacaaacacatcgaggtgatcgtgcgtcagatgctccagaaatgggaa
atctctgacagcggtgacacgacattgctcaagggtgaaaacgtcgacaaggccgagttt
gacgaggcgaatgccaagtcactggcgcgcaagggtcgccctgctcagggtgagccaatc
ttgctcggcatcactaaggcgtcgttgcaaacacgttcgttcatctctgcggcctcgttc
caggaaacaacgcgcgttcttacggaagcttccgtacagggcaagcgggacaaactggtc
ggtcttaaagagaacgtgatcgtcggccgtctgatccccgcaggtactggtggggcaacc
cagcaggtttccaagatcgcgactgatcgtgacaacgtggttattcaagcccgtcgcgaa
gaggcagaggccgccgccgcattggcagcacccgagcctgtgtccgaggatgtcattggt
ggcgacgtgttcgacacgatgatcgcggacacaccggaaaaccgcgaagagtaa
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