Lacunisphaera limnophila: Verru16b_03245
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Entry
Verru16b_03245 CDS
T04567
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Verru16b_03245 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obg03019
]
Verru16b_03245 (rnr)
03016 Transfer RNA biogenesis [BR:
obg03016
]
Verru16b_03245 (rnr)
Enzymes [BR:
obg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Verru16b_03245 (rnr)
Messenger RNA biogenesis [BR:
obg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Verru16b_03245 (rnr)
Transfer RNA biogenesis [BR:
obg03016
]
Prokaryotic type
tRNA degradation factors
Verru16b_03245 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_Dis3
OB_RNB
DUF1818
Motif
Other DBs
NCBI-ProteinID:
AOS46148
UniProt:
A0A1D8AZ26
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Position
3811896..3814118
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AA seq
740 aa
AA seq
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MKNHSERLFAHLSRKQYVPVPAAVIAKEWKLDKKRRVAFFAEIAQLVRSGQLTLIKNDRV
CLPKVADLVTGTINFRQKGSAMVAPEVRVTEPRKPAIYIDAADTGTALQGDKVVVRLRSP
RERDFPFFLKPGEQAGRVIEIIERGAATLTGTLHRGRTYFYVTPDDPRIPHDIIVPDPAA
AGLKPPALVGDKVVVKLNEWKERHQAPDGEVTQRLGRAFEPRAELAAIYHKYNLATSFPD
PVVREAAAILPEVQPSDLAGRRDFRDIPTFTIDPDDAKDFDDALSIEYLDHGEIRVGVHI
ADVSHYVKPGTALDKEAQLRGNSTYLVGTVVPMLPEKLSNGLCSLVEAKDRLTKAAIFTF
NRHGAIKTVEFANTVIRSRKRLTYKQAYALMFEDDLNKIRQLPLPGAHQTGSTGRALNEL
SHTELTDLQTWVRQLWAIGSKIRQARMADGSLDLDMPETKIFVDAEGYADRIEKIENDES
HQLIEEYMLLANEAVARLTRTNRLPSLYRVHDDPDEARLGELRQFLMTFNVKSGDLMNRD
EVVRLLATLKHHPQGFVLRTQLLRSMRKACYRPSHDGHYGLNKKDYTHFTSPIRRYADLV
VHRVLGAWLAKQPGYRATHTDQLAEHLSLTEINSTEAERDSVKVKLMEYFDREAERKKKT
VFNAIITDVRNHGFFIELSDAGAFGMVPISSLRDDFYVLNGPGTAFIGRKTKRKFELGHT
IQVIVAKVDRQKRLIDFTVP
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaccattccgaaagactcttcgcccacctctcccgcaagcaatacgtccccgtc
cccgccgcggtcatcgccaaggagtggaaactcgacaagaagcgccgcgtcgccttcttc
gccgagatcgcccagctcgtgcgctccggccagctcacgctcatcaagaacgaccgcgtc
tgcctgcccaaggtcgccgacctcgtgaccggcacgatcaacttccgccagaagggctcc
gccatggtcgcccccgaggtccgcgtcaccgagccccgcaagccggccatctacatcgac
gccgccgacaccggcaccgccctccagggcgacaaggtcgtcgtccgcctccgctccccg
cgcgagcgcgacttcccgttcttcctgaaacccggcgagcaggccggccgcgtcatcgag
atcatcgagcgcggcgcggccaccctcaccggcacgctccaccgcggccgcacctatttc
tacgtcacccccgacgatccccgcatcccccacgacatcatcgtgcccgaccccgccgcc
gccggtctcaagccgcccgccctggtcggcgacaaggtcgtcgtgaaactcaacgagtgg
aaggagcgccaccaggcccccgacggcgaggtcacccagcgtctcggccgcgccttcgag
ccccgcgcggaactcgccgcgatctaccacaaatacaatctggcgacttccttccccgat
cccgtcgtccgcgaagccgccgccatcctgcccgaggtccagccctccgacctcgccggc
cgccgcgacttccgcgatatcccgacgttcaccatcgaccccgacgacgccaaggatttc
gacgacgccctctccatcgaatacctcgaccacggcgagatccgtgtcggcgtgcacatt
gccgatgtcagccactacgtgaagccaggcactgccctcgacaaggaggcccagctccgc
ggcaactccacctacctcgtcggcaccgtcgtacccatgctgccggagaaactctccaac
ggcctctgctccctcgtcgaggccaaggaccgcctgaccaaggccgcgatcttcacgttc
aaccgccacggcgccatcaagaccgtcgagttcgccaacaccgtcatccgcagccgcaag
cgcctgacctacaagcaggcctacgccctcatgttcgaggacgacctgaacaaaatccgc
caactccccctgcccggcgcccaccagaccggctccaccggccgcgcgctcaacgaactt
tcccacaccgagctgaccgacctccagacctgggtccgccaactctgggccatcggctcg
aaaatccgccaggcccgcatggccgacggatccctcgacctcgacatgcccgagaccaag
atcttcgtcgacgccgagggctacgccgaccgcatcgagaagatcgagaacgacgagagc
caccagctcatcgaggaatacatgcttctcgccaacgaggccgtcgcccgcctcacccgc
accaaccgcctgccctcgctctaccgcgtgcacgacgaccccgacgaggcccgcctcggc
gaactccgccagttcctcatgacgttcaacgtgaagtccggcgacctcatgaaccgcgac
gaggtcgtgcgcctgctcgccaccctcaagcaccacccgcagggcttcgtcctccgcacc
cagctcctccgctccatgcgcaaggcctgctaccggcccagccacgacggccactacggc
ctgaacaagaaggactacacccacttcacctctcccatccgccgctatgccgaccttgtc
gtgcaccgcgtcctcggtgcctggctcgccaagcagcccggctaccgcgccacacacacc
gatcagctcgccgagcacctcagcctcaccgagatcaatagcaccgaggccgagcgcgat
tccgtgaaggtgaagctcatggagtacttcgaccgcgaggccgagcggaagaaaaagacc
gtcttcaacgccatcatcaccgacgtccgcaaccacggcttcttcatcgagctctccgac
gccggcgcctttggcatggtgcccatctcctccctccgcgacgacttctacgtcctcaac
ggccccggcaccgccttcatcggccgcaaaaccaagcgcaagttcgagctcggccatacc
atccaggtcatcgtcgccaaggtcgaccgccagaaacgcctcatcgacttcacggtcccg
taa
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