Octopus bimaculoides (California two-spot octopus): 106867593
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Entry
106867593 CDS
T04127
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
obi03016
]
106867593
Enzymes [BR:
obi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
106867593
Transfer RNA biogenesis [BR:
obi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106867593
Prokaryotic type
tRNA splicing ligases
106867593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
106867593
NCBI-ProteinID:
XP_014767997
EnsemblRapid:
LOC106867593
UniProt:
A0A0L8HZK1
LinkDB
All DBs
Position
6:complement(64076581..64130104)
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AA seq
504 aa
AA seq
DB search
MRTYNEELKYLEKVTPRSWRIKKGFVANMNVEGLFYVNDHLEKLMFDELKQSCNNRGFGG
FLPAMKQIGNVAALPGIVQKSIGLPDVHSGYGFAIGNMAAFDMSNPKAVVSPGGVGFDIN
CGVRLLRTNLDEKDVTPIKEQLCQCMFNHIPVGVGSKGIIPMNAQALEEALEMGMDWSLR
EGYSWAEDKEHCEEYGRMLQADPSKVSNRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDDY
AARKMGIDHTGQVCVMIHSGSRGMGHQVATDALVAMEKAMKRDKIEVNDRQLACAQINSQ
EGQDYLKSMAAAANYAWVNRTSMTFLSRQAFAKIFNSTPDDLDMHVIYDVSHNIAKVEEH
FIDGKQTSLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMED
TFGTTCHGAGRALSRAKSRRNLDYMDVLEALNAQGISIRVASPKLVMEEAPKSYKNVTDV
VNTCHEAGISKKAIKLRPIGVIKG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagaacctacaatgaagaactcaaatatctggagaaggttactcctcgcagttggaga
atcaagaaaggttttgttgccaatatgaatgtggagggattattttatgtaaatgatcac
ttggagaaactgatgtttgatgaattaaaacagtcttgtaacaaccgtggatttggaggc
tttttacctgctatgaaacagattggcaacgttgccgcacttcctggtattgtacagaaa
tccattggattaccagatgtccattcaggctatggatttgctataggtaatatggctgca
tttgatatgagtaacccaaaagctgtggtatcccctggtggtgtcggctttgatataaac
tgtggtgtacgtttgttgcgaaccaatttggatgaaaaagatgtcactcctattaaggaa
cagctgtgccagtgcatgtttaaccatattccagttggtgttggttcaaagggaataatc
cctatgaatgctcaagctttggaagaagctttagaaatgggtatggattggtcattgaga
gagggctattcctgggctgaagacaaagagcattgtgaagaatatgggcgtatgttacag
gcagatccctctaaagttagtaaccgagccaaaaaaaggggacttcctcagttaggaacc
cttggtgcaggcaatcactatgctgaagtccaggttgttgatgagatttatgatgactat
gctgcccgaaagatggggattgatcacactgggcaggtctgtgtcatgattcacagtggt
agtcgtggaatgggtcatcaagttgctacagatgctttagttgccatggagaaagcaatg
aagcgggacaaaattgaagtgaatgaccgtcaacttgcctgtgcgcaaatcaactctcaa
gaaggtcaagattaccttaaaagcatggctgcagctgcaaactatgcttgggtcaaccgg
actagcatgacattcctttccagacaggctttcgccaaaatcttcaacagcactcctgat
gacctggatatgcatgtgatttacgatgtctcacacaacattgctaaagtagaagaacac
tttattgacggcaagcagacaagcctattggtacatcgaaaggggtcgacacgagcattt
cctccgcatcatcctctcattcctgtagactaccagttaactggtcaacctgttttgatt
ggtggaacaatgggaacttgtagttatgtactgactggtactgatcagggaatggaagat
acatttggaacaacatgtcatggagctggccgagcactttcccgtgccaaatctcgtcgt
aatcttgattacatggacgtattagaggccttaaatgctcaaggaatcagtatacgagta
gcttcccctaaacttgttatggaagaagcaccaaaatcgtacaaaaatgtcacagatgtt
gtaaacacttgtcatgaggctggaattagtaaaaaggctatcaaactgcgtcctattgga
gtcattaaaggataa
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