Octopus bimaculoides (California two-spot octopus): 106868709
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Entry
106868709 CDS
T04127
Name
(RefSeq) ATP-dependent RNA helicase DHX58 isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
obi04054
]
106868709
Pattern recognition receptors [BR:
obi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
106868709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
RIG-I_C-RD
Helicase_C
CARD_2
RIG-I_C
CARD
AAA_19
SWI2_SNF2
SNF2-rel_dom
NACHT
nSTAND3
SecA_DEAD
AAA_11
AAA_30
Motif
Other DBs
NCBI-GeneID:
106868709
NCBI-ProteinID:
XP_052821716
EnsemblRapid:
LOC106868709
LOC106878073
LinkDB
All DBs
Position
2:complement(177787164..177873553)
Genome browser
AA seq
1122 aa
AA seq
DB search
MAEGYEKLFNSIKPLCAGYIEATHLLPHMSFIRPKAGSICKAHKKSSEEGFQVMYDALIQ
STTEDKWDIYYVALKEAEFNSICKLYVFMKEQADDFNSYCNIFEIFSTEITEGHLNIITF
ANDLNKMETIHDSQLKDIELAEKIEGTNSAAILLFSYFPSTLSYLMKDLDKYLKSLDRND
LLKKIQEAVPVCEDKVNYMSNDRSEMIMHFRQLILETVHPRDIWPKLVQDLGLPSNSIDY
TCRRDIEKVMDKFEADLYPGKSQSLYEALSEAGYEILCLKIDGGKCNDDINNYYKKLLEV
HHKILTEKIKVSEILESVLVAKVINKRDKDEIAAVHENKGDITAAQYLLEILPYKKNLWH
KDFFEILCKNKQRGLVNMIDPEYNYNSDAEADTDSDTNLDTNHENNPSQNQKQVRTNAKE
IKLREYQKELISKALLGKNCIIAAPTGSGKTVMAVKIIEHHFQENDGKCCKVIFLCNQTA
LAEQQKTVLMNSFPDLTINVIYGSPESQSKKMESFNLSDIVVMTPQCLVDNLKLGRIEGL
SIITLLIIDECHHTYCKHPYNILMSRYLDDKFKKVNCQLPQVIGLTAVVGIDVAKSGKNA
KEHFLEICANLDCEELCITKENVADLQEHVPVPVETVKSLPIESESALSKVIKSFMTDVH
KSLNNRELSANSLQFGTTQYIGWLSDAKKTVNSSPFELKHEFASIQYLEKCNKVLQILKG
YRAKDAIEILYDYLDNETLETDAFENLKILLKRKLEEFENYSTEEELEAESSCLLALVDL
IQKKFHDKPDSRVIVFVETKILTKILAKVLNDKSETADFNPQYLMAGINTESGPGMSINR
QKEVLGMFRSGECKLMIATPVAEEGLDIQKCNLVVDYLTVQGVRSHVQKRGRARAADGKY
IQIIGADPLLGKRATVNRMKVDKMQTIVNDVYEDQLNYPGVFKETLKEIQIQNRQERAAS
QMQKMKSVKSSGNYTLKCTSCNSTAAESSDFRNFEEKCYIIVNPDFRKKISISRSKPTIL
FDDVKRIGSFSCITCGLYWGNQVVYKHTIFDCISIKQFKIVPEGKTPILAKKWLKVPFRD
EVQSLTDEDFEMVRADSSNKFEDDLPLFLEKCPIPESNQNVD
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggcagagggctatgaaaaactgtttaactcaataaagcctctatgtgctggatacata
gaggctacgcatctactaccacacatgagttttataagacccaaagcaggttccatctgt
aaagcccataaaaagtcatctgaagagggatttcaagtaatgtatgatgcattaatacag
agtactactgaagacaaatgggatatttactatgtggcacttaaagaagcagaatttaac
tcaatttgcaaactctatgtatttatgaaagaacaagcagatgattttaattcctactgt
aatatatttgaaatattcagcactgaaataactgaaggtcatttgaacattatcacattt
gcaaatgatttgaataaaatggaaactattcatgacagtcaactgaaagatatagaactt
gctgaaaaaatagaaggaaccaattcagctgctattttattattttcatattttccttct
accttatcatatctgatgaaggaccttgataaatatcttaaatccctagacagaaatgat
ttgttgaaaaaaatccaagaagctgtccctgtctgtgaagataaagtaaattacatgtca
aatgacaggtctgaaatgatcatgcattttcgtcagcttatacttgaaactgtccaccca
cgagatatttggcccaaattagtacaggatctagggctaccttcaaacagcattgactac
acctgcagaagggacattgaaaaggttatggataagtttgaggcggatttatatccagga
aagtcacaatctttatatgaagctctttctgaagctggttatgaaatactttgtttgaag
attgatggtggaaaatgtaatgatgatattaacaattattataaaaaattattagaagta
catcataaaatactgactgaaaaaataaaggtctcagaaattttggaaagtgtcttagtt
gctaaagttattaataaaagagacaaagatgaaattgctgctgtacatgaaaacaaagga
gatataactgctgcccagtatctcttagaaatacttccttataaaaaaaatttgtggcat
aaagatttctttgaaatactttgtaaaaataagcagagaggtttagttaatatgattgat
cctgagtacaattacaattcagatgccgaagctgacactgattctgataccaatttggac
accaatcatgaaaacaatccatcacagaatcaaaaacaagtgagaactaatgcaaaggaa
attaaactccgtgaatatcaaaaagaattgatttcaaaagcccttttagggaaaaactgt
ataatagctgcaccgacaggaagtggtaaaacagttatggctgtgaaaattattgagcat
cattttcaagaaaatgatggaaaatgttgcaaagtaatctttttatgcaatcaaacagcc
ttagctgaacaacaaaaaactgttctgatgaattctttccctgatttgacaattaatgtt
atttatggatctcctgagagccaaagcaagaaaatggaatcattcaacttaagtgatatt
gttgttatgactccacaatgtttagttgacaacctgaagcttggtagaattgagggtctt
tccattattacactgctaataattgatgaatgtcatcacacatattgcaaacatccttac
aatattcttatgtcaagataccttgatgacaaatttaaaaaagtaaattgtcagctacct
caggttattggtttgacagctgtggttggtattgatgtagcaaaatctggtaaaaatgcc
aaagaacactttttggaaatttgtgccaatctagactgtgaggaattgtgcattactaag
gaaaatgttgcagatttacaggaacatgtacctgtacctgtggaaactgttaagtcatta
ccaatagaaagtgagagtgctctcagtaaagtaatcaagagttttatgacagatgtgcac
aagagtttaaataatagagaactcagtgcaaattctttacagtttggaactactcaatac
attggatggttgagtgatgcaaaaaaaaccgtgaattcatctccttttgaactcaaacac
gagtttgcaagtatacagtatctggaaaaatgtaacaaagttttacagatactgaaaggt
tatcgtgcaaaggatgccatagaaatattgtatgattatctagacaatgaaacacttgaa
acagatgcctttgaaaatttgaagatattgttaaaacgtaaactggaggaatttgaaaat
tatagcacagaagaagaactggaggctgaaagttcatgtcttttggcacttgtagattta
atccagaaaaaatttcatgataaaccagattcccgtgtcatagtgtttgttgagaccaaa
attttgacaaagattttggcaaaagtgttaaatgataaaagtgaaacagctgatttcaat
ccacaatatttgatggcaggaataaatacagagagtggtcctggtatgtcaataaatagg
caaaaagaagtacttggaatgtttcggagtggtgagtgcaaacttatgattgcaactcct
gtagcagaagaaggtttagatattcagaaatgcaacttagtagttgattatttgactgtg
cagggagtaagatctcatgtgcaaaaaagaggccgagctcgagcagcagatggtaaatac
attcagattattggtgcagatccactcttgggcaaaagagctactgtaaaccgtatgaaa
gttgataaaatgcaaactatagtgaacgatgtttacgaagatcaattgaactatccaggt
gttttcaaggaaactttgaaagaaattcagattcaaaataggcaagaacgtgctgcttcc
caaatgcagaaaatgaagtctgttaagagttcaggtaattatacgctgaaatgtacatcc
tgtaactctactgctgctgagagttcagattttcgaaattttgaagagaaatgttatatc
attgtaaatcctgattttcgaaagaagattagtatttcaagaagcaaacctacgatatta
tttgacgacgttaaacgtataggcagtttttcttgcattacctgcggtctttattgggga
aatcaagtggtttataaacatactatattcgattgcatatcaataaagcagttcaaaata
gtccctgaagggaaaactcctatacttgcgaaaaagtggttgaaagtaccatttagagat
gaagttcagtccctcactgatgaagattttgaaatggttcgtgcagatagttctaacaag
tttgaagatgatttgccattgttccttgaaaaatgtccaatccctgaaagtaaccaaaat
gtagattaa
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