KEGG   Ooceraea biroi (clonal raider ant): 105279705Help
Entry
105279705         CDS       T05778                                 

Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
obo  Ooceraea biroi (clonal raider ant)
Brite
KEGG Orthology (KO) [BR:obo00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:obo01009]
    105279705
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obo03019]
    105279705
   04131 Membrane trafficking [BR:obo04131]
    105279705
   03036 Chromosome and associated proteins [BR:obo03036]
    105279705
Enzymes [BR:obo01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     105279705
Protein phosphatases and associated proteins [BR:obo01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105279705
Messenger RNA biogenesis [BR:obo03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     105279705
Membrane trafficking [BR:obo04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    105279705
Chromosome and associated proteins [BR:obo03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     105279705
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 105279705
NCBI-ProteinID: XP_011337946
LinkDB All DBs
Position
7
AA seq 1169 aa AA seqDB search
MTESIANSDLFTAAKQLVESEIELIKVIENSSKCQTTVMNMYTAAKKTKKPGKSKNGRPS
AALLAAKREAAQRQLLEKKPSNSFVRDIYQRTIDAYKTIRKDTGLVFDRSMAEHECLWDT
NYPECPARFMRVLQRCEELDLVQRCKLIESRLATESEILMKHNQKQIDILKATDGCTDSE
NLELLSSKYDCVFVHPSTYRLSLLAAGSTINLVESICKDEVQNGMAIVRPPGHHAMKSEF
CGYCFFNNVALAAEKALSSNLASRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEYGE
FWPNLKESDFHYIGEDLGEGYNFNIPLNKTGMTNADYIAIFQQVLLPMAYEFQPDLVIVS
AGYDAALGCPEGEMLITPACYTHLLSSLLSLAAGKVAVILEGGYCLKSLAESAALTLRTL
LRDPCPVLQVLDLPSSSIRETILNVIYAHKPYWKCYQYQDTYNINSVTHNKEEMANRHIV
MVTYKGSEVKPEKYETRNCYPIQSKEVLDTTEKKLDKLIQFTNLYKAPHKVCIVYDERMQ
KHCDFSDNTHPEKPSRISSIYKNHEEYGLLERCHLLQGRSATIEELSLVHSKEYIEAMKT
TSTLKLKELQKLASEYNSVYFHPETWSSACLSAGSLLQVLDDVLNRRSQSGVAIVRPPGH
HAGDNTACGFCIFNNVAVAAACAVQFYHLKRVLIVDWDVHHGNGTQYIFEEDPRVLYISV
HRYDNGSFFPNSKAANYTSVGLKAGEGFSVNVPWNKKGMGDAEYIAAFQQVVMPIAYQFN
PELVLVSAGFDACVGDPLGGCHVSPEMYGHLTHWLSSLANGRIILSLEGGYNINSISHAM
TMCTKALLGDPMPMLDPGLIPCPSAVNSINNVLKTQKKFWPNLQYGMSLPKEKLLPKVRT
APDKLEEERNAEKPKRTESKIALEGLESEKLELNLIDKNHLSQVTDEEILKLTNEIENIK
IKNSKLDTVKSEADERKNPGSKSEMKSSDVSQNIQKCVNETNQSRNTQQANSSIREDRDD
EDAASLQRETQSANLLEYLSENLQALTAGEMFAVVPLRDCPHLFTVNEVPPSGIDVTSPC
VECGSTAENWICLQCYTVHCARSINQHAMQHATEFEHPITLSFSDISVWCYGCEAYIDNP
RLYAARNAAHQSKFNEELPWTYNEITNTP
NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt
atgactgaatccatagcaaactcggatttatttactgctgctaaacaactagtggaaagc
gaaattgagctgataaaggtaatcgaaaattccagcaagtgccaaacaactgttatgaac
atgtacacagcagcaaagaaaacaaaaaagcctggaaaatcaaaaaatgggcgtccatca
gctgcattattggctgccaagcgagaggcagcgcagcgacagttactggagaaaaaaccc
agcaacagctttgtacgcgatatataccagagaacaattgacgcatacaaaacaatacga
aaggacaccggtcttgtgtttgaccgaagcatggcagagcatgaatgtctctgggatacg
aattatcccgagtgcccagccagatttatgcgggttttgcagaggtgcgaggaactggac
ttggtgcagcgatgcaaactcatcgaatcaagactggcaacagagagcgagatactgatg
aaacataaccagaagcaaatcgatattctgaaagcgacggatggctgcacagattctgag
aatttggaattgctgtcttctaaatacgattgcgtctttgttcacccgtctacgtacaga
ttgtctttattagctgcaggctcgacgatcaatttggtagaaagtatctgtaaagacgag
gtgcaaaatggcatggctatagtcagaccaccaggtcatcatgcaatgaaatcagaattt
tgtggttactgcttcttcaacaacgtagctcttgcagcggagaaagctctgagctccaat
ttggcgagtaggattttaattgtcgattgggacgttcaccatggacaggcgacgcaacaa
atgttctataacgatccacgtgtagtctatttttcaatacatcgttatgaatacggcgaa
ttttggccaaatttgaaagaatctgactttcattacattggagaagaccttggagaagga
tataatttcaatatacctctgaataaaactggcatgacgaatgctgattacatcgcaatt
ttccaacaagttttgttgccaatggcttatgagtttcaaccggatctggtgatagtgtca
gctggttacgatgcagctctgggttgtccagagggtgagatgttgataactccggcatgt
tatacacacttgctatcatcattgttaagcttggcagccgggaaagttgctgtaatttta
gagggtggttattgcttgaagtctttagcggaaagcgcagcattaactttaagaactcta
ttgcgtgatccatgtcctgttctgcaagtacttgatttgccatcatcaagtatacgtgag
actattttaaatgtaatctacgcgcataaaccttactggaaatgttatcaataccaagat
acgtacaatattaacagcgtaacgcacaacaaggaggagatggccaatcgacatatagtt
atggttacgtacaagggcagcgaagttaaaccagaaaagtatgaaactcggaattgttac
cctatacagagcaaggaagttttggatactacggagaaaaaattggacaaattaatacaa
tttacaaacttgtataaagcgcctcataaagtgtgcatcgtgtatgacgaaaggatgcag
aagcattgtgacttttctgacaatactcatccagagaagccgtctcggatctccagcatt
tataagaatcatgaagagtatggcttgctagaacgatgccacttgttacaaggaaggagt
gcaacgatagaagaattatcgttagtacattcaaaggaatatatcgaggccatgaagacg
acgtcaacattaaaactcaaggaattacaaaagctagcttcggaatacaattctgtttat
tttcatccggaaacgtggtcaagtgcttgcctgtccgctggctcccttctgcaagtattg
gatgacgttctgaacaggaggagccaatccggagtggcgattgtgagacccccaggacac
cacgctggagataacaccgcgtgcggcttttgtatctttaataacgtggctgtggctgcg
gcatgtgctgtacagttttatcatttaaaaagagtgttaatagtagattgggatgtgcat
catggaaacgggacgcaatatatcttcgaagaggatccgagagtcctttatatctctgtt
catcgttacgataatggaagcttctttccgaattccaaggcagctaattatacaagtgtc
ggcttgaaggcgggcgagggattcagtgtaaacgtaccgtggaataagaagggaatggga
gacgccgagtacatagcagcgttccaacaggttgtgatgcctatagcttatcagtttaat
ccggaattagttctggtttccgctggattcgatgcttgtgtaggcgatccacttggcggt
tgtcacgtaagtccagaaatgtacggccatttaactcactggctctcatccctggccaat
ggtcgtataattctcagtctcgaggggggctacaacatcaactcgatctcgcatgcaatg
acaatgtgtaccaaggctctcctgggcgatcctatgcccatgctggaccctggtttgatc
ccttgccccagtgcggtcaattctatcaacaatgtgctgaagacgcaaaagaaattctgg
cctaatctgcaatacggaatgtcattgccgaaagaaaagctgcttcctaaagtgagaacg
gcacctgataaacttgaggaagaaagaaacgcggagaaaccgaagcgtacggaatcgaag
atcgccttggaaggactcgaaagtgagaaactagaattgaatttgatagacaagaatcat
ctgagtcaagtgacagacgaagagatcttgaagctaacgaacgagatagaaaatatcaag
attaagaattccaagttggatacagtgaaaagtgaggcagacgagaggaagaatcctgga
tcgaagagcgagatgaaaagctcagatgtttcgcaaaatatacagaaatgcgtaaacgag
acgaatcagtcgaggaacacccagcaagcaaactccagtatccgcgaagaccgtgacgac
gaggatgcggcatctcttcagcgtgagacgcaatcggcgaatcttctagagtatctctct
gaaaatctacaggctctgacagcgggagaaatgtttgctgtggtgcctttgcgtgactgt
ccacacttgttcacggtaaacgaggttcctccgagtggaattgatgtgacttcaccctgc
gtggagtgcggcagcaccgcggaaaactggatctgtctgcagtgttacactgtgcactgt
gctcgcagcataaatcagcacgcgatgcaacacgcaacggagtttgaacatcctatcacg
ctcagctttagtgatatttccgtctggtgctacggttgtgaggcctacattgataatcct
cgattatatgcggcaaggaacgcagctcatcagagcaaattcaatgaagaacttccctgg
acttataacgagattacaaacacgccttaa

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