Ooceraea biroi (clonal raider ant): 105280984
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Entry
105280984 CDS
T05778
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03022
Basal transcription factors
obo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105280984
09124 Replication and repair
03420 Nucleotide excision repair
105280984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obo03021
]
105280984
03400 DNA repair and recombination proteins [BR:
obo03400
]
105280984
Transcription machinery [BR:
obo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105280984
DNA repair and recombination proteins [BR:
obo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105280984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
105280984
NCBI-ProteinID:
XP_011340181
LinkDB
All DBs
Position
5:complement(13443332..13446037)
Genome browser
AA seq
467 aa
AA seq
DB search
MSNAISGKNLLRPNGLQSKNLQEYLKSRSPDTLNKLYHKPPICLAVFRELPVIAKHYVMR
LLFVEQPVPQAVIASWCSKLYFEEHQKVVQILNELYVWKEASIPGGLPGWILNNTFKKNL
KIVLLGGGKPWTMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEADGSPVITQAGFQFLLLDTASQVWYFILQYLDTLEARGLDLVECLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGENKPL
TRDTDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKS
GITAVQIVGYLQQHAHSKMIEAGPPVLPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQT
DFEVLRDHALSTGVLIWQNERKRTMVVTKAAHDDVKKFWKRYSKGSG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgcgataagcggcaagaatctgttgcggccgaacggcctgcagtccaagaat
ctgcaggagtatttgaagtcgcgttcaccggataccttgaacaaactgtatcacaagccg
cctatatgtctggccgtgtttcgcgagctacccgtgatcgccaagcattacgtgatgcgg
ttgttgttcgttgagcaaccggtgccgcaggcggttatagcgtcgtggtgctcgaaactc
tacttcgaggaacatcagaaggtagtgcagatcttgaacgagctctacgtgtggaaagag
gcgtccatacctggcggactaccgggttggatcttgaacaatacgtttaagaagaatctg
aagatcgtgctgctgggtggtggcaaaccgtggaccatgtccaatcagctagagactgat
agcaaaccgcgagacgtggctttcctagattcgtatgcattggaaaggtgggagtgcgtt
ttgcattatatggttggctcccaacagcaggagggtatatctgctgatgctgtacgtatc
ctcttacatgctggtttgatgaaaagagacgaagcagatggtagtccggttataacacaa
gctggttttcagttcctgcttctggatacagcttcgcaggtgtggtactttatcttgcaa
tatctggatacactcgaggcacgtggtcttgatctagtcgagtgccttactttcctgttt
caattaaatttttccaccctcggtaaggattacagcaccgaaggcatgtccgaaggactc
ctaacatttttacaacacttacgagaatttggtctggtatatcaacgaaaacgcaaagca
gggaggttttatcctactcgattagcattaaatattgcgaccggtgagaataagccgtta
actagagatacagataaggaaggttacatagttgtggaaacgaattatcgagtgtacgct
tacacaaactctaatttacaagtcgcgttactcggactcttctgcgaaatgctgtatagg
tttccaaatttggttgtatcgatactgacgagagattccgtaagacaagcgttaaaaagt
ggaataactgcagtacaaatagtgggttatttacagcaacatgcgcatagtaagatgata
gaagcaggaccacccgtgttacctcctaccattgtagatcaaatcaaactatgggaaaat
gagagaaacagattcctgttcagcgaaggggttttgtacagtcaatttctttcgcaaacc
gattttgaggtccttagagatcacgcgttgtcgactggggtattaatttggcagaatgaa
agaaagaggaccatggtagtcactaaggcggcgcatgacgatgtgaagaagttctggaag
cgatactcgaagggttcgggttaa
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