Oceanimonas sp. GK1: GU3_11915
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Entry
GU3_11915 CDS
T01667
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
oce
Oceanimonas sp. GK1
Pathway
oce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GU3_11915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oce03400
]
GU3_11915
DNA repair and recombination proteins [BR:
oce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GU3_11915
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GU3_11915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
UB2H
AAA_22
Kinesin
DUF87
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AEY02138
UniProt:
H2FX06
LinkDB
All DBs
Position
complement(2594035..2596035)
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AA seq
666 aa
AA seq
DB search
MSKTFQLVSDYQPGGDQPTAIAKLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPT
MVLAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIE
QMRLSATKALMERRDVIIVASVSAIYGLGDPQSYLSMMLHLRTGDVLEQRDMLRRLAELQ
YTRNDAAFQRGTFRVRGEVVDIFPAESDCEAVRVELFDDEIERISLFDPLTGAVLQTLAR
FTIYPKTHYVTPRETLLQAIEHIKQELNERKAQLLSANKLLEEQRISQRTQFDIEMIQEL
GYCSGIENYSRYLSGRAEGEPPPTLFDYLPGDGLLIIDESHVTVPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPLRFEEFEALMPQTVFVSATPGPYELDKSGTDIAEQVVRPTGLLD
PELEVRPVATQVDDLLSEARLRVARGERVLVTTLTKRMAEDLTEYLNEHGVKVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLHGKAILYADRITRSMAAAIGETERRRAKQQAFNEAHGIVPRGLNKRITDVMDLD
GTKRIGSKRAKEKTPLPEHLPSARELSQQIDELEKQMLAHAQNLEFEQAAAVRDRIHLLR
EQLIRS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacatttcaactggtgagcgattatcaaccggggggcgatcagcccaccgcc
atagcaaaactgctggacgggattgagtccggactggcacaccagaccctgctgggggtg
accggctccggcaagaccttcaccatggccaacgtcattgccacccttaaccggcccacc
atggtgctggcgcccaacaagaccctggcggcccagctttatggtgagatgaaggaattt
tttccccacaacgcggtggagtatttcgtttcctattacgactactaccagcccgaggcc
tatgtgccgaccaccgatacctttattgaaaaggacgcctccatcaacgatcacatcgag
cagatgcggctgtccgccaccaaggcgctgatggagcggcgggatgtgatcatcgtggcc
tcggtatcggccatctacggtctgggggatccccagtcctacctcagcatgatgctgcac
ctgcgcaccggcgatgtgctggagcagcgggacatgctgcgccggctggcggagctgcaa
tacacgcgcaacgacgccgcctttcagcggggcacctttagggtgcggggcgaggtggtg
gatatctttcctgcggaatcggactgtgaggcggtgcgggtggaattgttcgacgatgaa
atcgagcgcatcagcctgttcgacccgctcaccggtgccgtgctgcaaaccctggcccgt
ttcaccatctaccccaaaacccactacgtcacgccgcgggagaccttgctgcaggccatt
gagcacatcaagcaggagcttaatgagcgcaaggcccagttgctctcggccaacaagctg
ctggaagagcagcgcatcagccagcgcacccagttcgacatcgagatgatccaggagctg
ggttattgctccggcatcgagaactactcccgttacctgtcgggccgggccgaaggcgag
ccgccgcccaccctgtttgactacctgcccggcgacggcctgctgatcattgatgagtct
cacgtcaccgtgccccagatcggcggcatgtacaagggcgaccgttcccgcaaggaaacc
ctggtggaatacggcttccgtctgccctcggcgctggacaaccggcccctgcgttttgag
gagttcgaggcgctgatgccgcaaacggtgttcgtgtcggccacgccgggtccttatgaa
ctcgacaagtccggcaccgacatcgccgagcaggtggtgcggcccaccggcctgcttgac
cccgagcttgaggtgcgaccggtggccactcaggtggatgacttgctctccgaagcccgg
ctgcgtgtggcgcggggcgagcgggtgctggtcaccaccctcaccaagcgaatggcggag
gacctcaccgagtacctgaacgagcacggcgtcaaggtgcgctacctgcattccgacatc
gacaccgtggagcgtatggagatcattcgcgatctgcgcctgggcgagtttgacgtgctg
gtgggcatcaacctgctgcgggaaggcctggacatgccggaagtgtccttggtggccatt
ctcgatgcggacaaggaaggctttttgcgctccgagcgctcccttattcagaccataggc
cgggcggcgcgcaaccttcatggcaaggccattctttacgccgaccgcattacccgctcc
atggccgccgccatcggggaaaccgagcggcgccgggccaagcagcaggcctttaacgaa
gcgcacggcatagtgccgcggggcctcaacaagcgcattaccgatgtgatggatctcgac
ggtaccaagcggataggctccaagcgggcgaaagagaaaaccccgctgcccgagcatctg
cccagcgccagggagctcagccagcagattgacgagctggaaaaacagatgctggcccat
gcccagaacctggaattcgagcaggcggcggcggtgcgggatcgtattcacctgctcagg
gagcagctgatccgcagttga
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