Afipia carboxidovorans OM5 (Goettingen): OCA5_c18330
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Entry
OCA5_c18330 CDS
T01617
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ocg03009
]
OCA5_c18330 (rimO)
Enzymes [BR:
ocg01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
OCA5_c18330 (rimO)
Ribosome biogenesis [BR:
ocg03009
]
Prokaryotic type
ribosomal protein modification factors
OCA5_c18330 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AEI06546
UniProt:
B6JF93
LinkDB
All DBs
Position
complement(1985415..1986737)
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AA seq
440 aa
AA seq
DB search
MNQGVPPKISFVSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVSTCGFLDSAKQ
ESLGAIGEAMAENGKVIVTGCMGAEPEQIEKEYPNLLSITGPQQYESVLDAVHRALPPLH
NPHLDLLPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSRPADDVLREAEKLV
VAGVKELLVVSQDTSAYGIDIKYAPSAWKDREVRARFVDLARELGELGAWVRLQYVYPYP
HVDDVIPLMGGNILPYLDIPFQHANTEVLKRMRRPAAQDKTLARIHKWREQCPDLTLRST
FIVGFPGETESEFQDLLDWLDEAQIDRLGCFKYEPVAGATSNALENPVPDEIKTARWNAL
MARQQKISAQRLKRKVGTRQQVIIDEVGPSVAKGRSKADAPQIDGSVYVASRRPLKVGDI
VTVKIERADEYDLHGSVAGF
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaggcgttcctccgaaaatcagcttcgtgtcgctcggctgccccaaggcgctg
gtggattccgagcgcatcatcacgcgcctgcgcgcggaaggctatgagcttgcccgcaag
cacgacggcgccgacatcgttatcgtcagcacctgcggttttctcgacagcgccaagcag
gaatcgctcggtgccatcggcgaggcgatggccgagaacggcaaggtcatcgtcaccggc
tgcatgggcgcggagcccgagcagatcgagaaggaatatccgaacctcctctccatcacc
ggcccgcagcaatacgagagcgtgctcgatgccgtacatcgtgcgctgccgccgctgcat
aacccgcatctcgatctgctaccgccgcaaggcatcaagctgacgccacggcactacgcg
tatttgaagatttccgaaggctgcaacaaccgctgcaccttctgcatcatcccgaagctg
cggggcgatcttgtctcacgcccggccgacgatgtgctgcgcgaggcggaaaagctcgtc
gttgccggcgtgaaggaattgctcgtcgtttcgcaggatacgtctgcttatgggatcgac
atcaaatacgcaccgagtgcgtggaaggatcgcgaggtgcgtgcgcgcttcgtcgatctt
gcgcgcgaactcggtgaactcggcgcatgggtgcggctgcaatacgtctatccctacccg
catgtcgatgatgtcattccgctgatgggcggcaacatccttccctatctcgacattccc
ttccagcacgccaacaccgaagtgctaaagcgcatgcgccgcccggccgcgcaggacaag
acgctcgcacgcatccacaaatggcgcgagcaatgccccgacctcacgctgcgctcgacc
ttcatcgtcggctttccgggcgagacggaatccgaatttcaggatctgctcgactggctc
gacgaagcgcagatcgatcgcctcggctgcttcaagtacgagccggtcgcaggcgcgacc
tcgaatgcgcttgaaaatccggtgccggatgagatcaagactgcgcgctggaatgcgctg
atggcccgccagcagaagatttccgcgcagcgactgaagcgcaaggtcggcacgcgtcag
caggtcatcatcgacgaggtcggcccgagcgttgcgaaggggcgctccaaggccgatgcg
ccgcagatcgacggttcggtttatgtcgcaagccgccgtcccttgaaggtcggcgacatc
gtcaccgtgaagatcgagcgcgccgacgaatacgacctgcacggcagcgtggcgggattt
tga
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