KEGG   Oligotropha carboxidovorans OM5 (Goettingen): OCA5_c27960Help
Entry
OCA5_c27960       CDS       T01617                                 

Gene name
lig
Definition
(GenBank) ATP-dependent DNA ligase Lig
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ocg  Oligotropha carboxidovorans OM5 (Goettingen)
Pathway
ocg03030  DNA replication
ocg03410  Base excision repair
ocg03420  Nucleotide excision repair
ocg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ocg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OCA5_c27960 (lig)
   03410 Base excision repair
    OCA5_c27960 (lig)
   03420 Nucleotide excision repair
    OCA5_c27960 (lig)
   03430 Mismatch repair
    OCA5_c27960 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocg03032]
    OCA5_c27960 (lig)
   03400 DNA repair and recombination proteins [BR:ocg03400]
    OCA5_c27960 (lig)
Enzymes [BR:ocg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OCA5_c27960 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     OCA5_c27960 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     OCA5_c27960 (lig)
DNA replication proteins [BR:ocg03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    OCA5_c27960 (lig)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     OCA5_c27960 (lig)
DNA repair and recombination proteins [BR:ocg03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     OCA5_c27960 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     OCA5_c27960 (lig)
   MMR (mismatch exicision repair)
    Other MMR factors
     OCA5_c27960 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID: AEI07489
UniProt: B6JC89
LinkDB All DBs
Position
complement(2977283..2978974)
Genome map
AA seq 563 aa AA seqDB search
MNRFAHLLDRLAYEPGRNNKLRLITAYFREVPDPDRGWALAALTGALSFRHAKPGLIRDL
ITARTDPALFALSYDYVGDLSETVALMWPSVHASTNGDAKHSPTLTEIVTTLHTLGKTEI
PAQLASWLDELDETGRWALLKLVTGGLRIGVSARLAKTAAAALGDKDPHEIELIWPGLAP
PYLDLFAWLEGRAEKPINRDPAPFRPVMLAHAIEDSDFAGLDPADFIAEWKWDGIRVQAV
SGRKSEEHVLARLYSRSGEDITASFPDLVPSLRLPGAIDGELLVLREGRVQSFNVLQQRL
NRKSVTPKLMKDYPIHLRAYDLLAEGEDDLRDLPFIDRRARLERFIARLDDPRIDLSPQV
VFATWDDLTAARANPSDAGAGDDADAVEGVMLKRRDALYLPGRQRGQWWKWKHDPHVIDA
VLMYAQRGHGKRSSYYSDYTFGVWTVGEGGDELVPVGKAYFGFTDEELVQIDRFVRRNTV
EKFGPVRHVVHEPNKGLVLEVAFEGLARSPRHKSGVAMRFPRISRLRWDKPPGEADRLET
LKRLLKEDLASVVAEGLLGRRAG
NT seq 1692 nt NT seq  +upstreamnt  +downstreamnt
atgaaccgctttgcgcacctgctcgatcgcctcgcttatgagcccggacgcaacaacaag
ctgcggttgatcacagcgtattttcgtgaggtgccggaccccgatcgcggctgggcgctg
gcggcactgaccggtgcactgtcgtttcgccacgccaagccgggcctgatccgcgacctg
atcacggcgcgcaccgatcccgcgctgttcgcactatcttacgattatgtcggcgacctc
tcggaaaccgtggcgctgatgtggccttccgttcatgcctccacgaacggcgatgcgaag
cattctccgaccctcaccgaaatcgtcaccacgttgcatacgcttggcaagaccgagatt
cccgcgcagcttgcaagctggcttgacgaactcgacgagaccggacgctgggcgctcttg
aagctcgttaccggtggcttgcgcatcggcgtctccgcgcggcttgccaagaccgcggcc
gcagcgcttggtgacaaggacccgcatgagatcgaattgatatggccaggcctcgcgccg
ccttatctcgatctgttcgcctggctggaaggtcgcgctgaaaagccgatcaatcgcgat
cctgcaccatttcgcccggtgatgctggcgcatgccatcgaggatagcgattttgcggga
ctcgatccggcagatttcatcgcggaatggaagtgggacggcatccgcgtgcaggctgtc
agtggccgcaagagcgaggagcatgtcctcgcgcggctctattcgcgtagcggtgaggac
atcacggcgagctttcccgatctcgtaccgtcgctacgcctgcccggcgcaatcgatggc
gagcttctggtgctgcgtgaggggcgggtacagagcttcaacgtgctgcagcagcggctc
aaccgcaaaagcgtgacgccgaagctgatgaaagattatccgatccatctgcgtgcttac
gatctacttgccgaaggtgaggatgacctgcgcgaccttccgtttatcgatcgtcgcgca
cggctcgagaggttcattgcgcggctggatgatccgcggatcgatctgtcgccgcaggtg
gtattcgcgacatgggatgacctcaccgccgcgcgtgccaatccatcagatgcaggcgca
ggcgacgatgcggatgccgtggaaggtgtgatgctgaagcgccgtgatgcgctctatctt
cccggccggcagagagggcagtggtggaagtggaaacatgatccgcatgtgatcgacgcc
gtgctgatgtatgcccagcgtggccacggcaaacgctcctcctattattcggattacacg
tttggggtctggactgtcggtgaaggtggcgatgagcttgtgccggtgggcaaggcatat
tttggctttaccgacgaggagcttgtgcagatcgaccgctttgtccgccgcaacacggtc
gagaaattcggccccgtgcgtcatgtggtgcatgagccgaacaagggacttgtgctggag
gtggcgtttgaagggttggcacgctcaccgcgccataaatccggcgtcgcgatgcgcttt
ccgcgcatcagccggctgcgctgggataagccgccgggcgaggctgaccggctggagacg
ttgaaacgattgttgaaggaagacctcgcgtctgtggtcgccgaagggttgcttggccga
cgtgcaggatga

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