KEGG   Oceanisphaera avium: CBP12_02145Help
Entry
CBP12_02145       CDS       T04855                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ocm  Oceanisphaera avium
Pathway
ocm03030  DNA replication
ocm03410  Base excision repair
ocm03420  Nucleotide excision repair
ocm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ocm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBP12_02145
   03410 Base excision repair
    CBP12_02145
   03420 Nucleotide excision repair
    CBP12_02145
   03430 Mismatch repair
    CBP12_02145
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocm03032]
    CBP12_02145
   03400 DNA repair and recombination proteins [BR:ocm03400]
    CBP12_02145
Enzymes [BR:ocm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CBP12_02145
    6.5.1.6  DNA ligase (ATP or NAD+)
     CBP12_02145
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CBP12_02145
DNA replication proteins [BR:ocm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CBP12_02145
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CBP12_02145
DNA repair and recombination proteins [BR:ocm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CBP12_02145
   NER (nucleotide excision repair)
    Other NER factors
     CBP12_02145
   MMR (mismatch exicision repair)
    Other MMR factors
     CBP12_02145
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ART79092
UniProt: A0A1Y0CUY0
LinkDB All DBs
Position
463336..464196
Genome map
AA seq 286 aa AA seqDB search
MQYFLTLLPLAVISISVNAAHPNAPPLQLAARFQQQDVRRYWVSEKLDGVRAYWDGEALW
SRAGHRFMAPKWFIASFPQQHLDGELWLGRGQFEKVSAVVRRYQASDDEWREVRFMVFDM
PNQPQKFSERVLALNELASSHSSPYLAVVAQRRLPNNQALASYLAKIVSGAGEGVMLRHQ
DSFYQPGRNQELLKLKQFQDAEAKVVAYLPGQGKYKNMLGALVVQDKEGRQFRLGSGFSD
KQRHSPPAIGSIITYRYQGQTHTGQPRFAHFLRVRDDEPKLGGKSK
NT seq 861 nt NT seq  +upstreamnt  +downstreamnt
atgcaatattttcttactttattgccgctggcggtaatatccatttctgttaatgccgcg
cacccgaacgcgccacccctgcagttagctgctcgctttcaacaacaagacgttcgccgc
tattgggtgagtgaaaaactcgatggcgtgcgggcttattgggacggtgaagcactgtgg
tcacgggccggacatcgctttatggcgcctaagtggtttatcgcctcgtttccacagcag
catttagatggtgagctttggttggggcgtgggcaatttgagaaagtatcggcggtggtg
cgccgttatcaagccagcgatgatgaatggcgagaagtgcgttttatggtgtttgatatg
ccaaaccagccacaaaaatttagtgagcgagtgctggcgctaaacgagttagcctccagc
cattccagtccttatttagcggtagttgctcagcgcagactacctaataatcaagcgctg
gcctcctatttagcaaagatagtgtctggcgcaggtgagggcgttatgctgcgccatcaa
gatagtttttatcagccagggcgcaaccaagagttactgaagcttaaacagtttcaagat
gcagaagccaaggtggtggcttatttgcctggacaaggtaaatataaaaacatgctaggt
gccctcgtagtacaagataaagaagggcgccaatttcgcttagggagtggctttagcgat
aagcaacgccactctcctcctgccattggtagtatcattacttatcgctatcaaggacag
actcatactggtcaaccgcgttttgcgcattttttgcgagtgcgcgacgatgagcctaaa
ctaggcgggaaaagtaaataa

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