Oceanisphaera avium: CBP12_03710
Help
Entry
CBP12_03710 CDS
T04855
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ocm
Oceanisphaera avium
Pathway
ocm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBP12_03710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocm03019
]
CBP12_03710
03009 Ribosome biogenesis [BR:
ocm03009
]
CBP12_03710
Enzymes [BR:
ocm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CBP12_03710
Messenger RNA biogenesis [BR:
ocm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBP12_03710
Ribosome biogenesis [BR:
ocm03009
]
Prokaryotic type
rRNA processing factors
CBP12_03710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ART79364
UniProt:
A0A1Y0CWI0
LinkDB
All DBs
Position
816249..819338
Genome browser
AA seq
1029 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQKLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIARNYFPAGYTYQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSQLDLPDGMGLIVRTAGVGKSGEEL
EWDLHVLQAHWNAIQEAAQGGTAPFLIHQESNVIVRAIRDYLRRDIGEILIDNPVVFERA
QKHIELVRPDSLKLVKLYDGDVPMFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRQDRARIQLGRISRFGLLEMSRQRLRPSLGESSTHVCPRCLGQGTIRDNESLAL
AILRLIEEEALKDNTGQIHGQVPVDVAAYLLNEKRKSIATLEQRYNVEIYIIPNEQLETP
HFSVERVRSGEEESATSYSLKTPVEKRVYTPRDSQNGPRSEQPVLQGFSAPTPAPQATPT
VAATAARPGLLSRLFATLSQWLTGDNSAQAIPGATSNNTTARPSPSANNGQSARNNERSA
SRTQPRRERSDTRNPRNAPRKPREDERSATAQSEQKPATKGAASETRNERPRRERRKPRR
EPVAAQTPETSTSPTQATVAPESQEKNLAERRQRRQLRKQVRVGADNSTASSATSQNQSA
EAPAKEALKRSTMPKRKRINEDSRRRRREDSIAALVASQGEDKWIASEDALAAAQPKATT
DSSVTPTETSAKVAEHKAALQAPPANTPAETQESNAPQSAVANPAQTKVAATKPEVANIE
PVTASEATQPEAVTATQPEAPKPEAVKPEHAKVEDTKAEDTPVISAPEITAKPIPETQPE
VAESSPQPSEPQPSERPTEIKAEVVSDAKPVAEASKSSAVAEQPSANMEPTAATKPVAAA
HPSAASGLYQGSRRVSAPMVKPEVIAQPPFVKPDYPAFTREQVITSGRHAGSTAAQHTAS
AAMTSPRQL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaagaagaagagttgcgtgttgccctagtagat
gggcaaaaactctatgatttggatattgaaagcccaggtcacgaacaaaagaaagccaat
atctataaaggaaaaattacccgtgttgagcctagccttgaagccgcgttcgtggattat
ggtgcggatcgtcatggttttttacccttaaaagaaattgctcgtaactatttccctgca
ggctacacctatcaaggccgccctaacatcaaagaagtggtgaaagaaggccaagaagtg
attgtacaaattgataaagaagagcgcggtaataaaggtgcggcgctcactacctttatt
agtttagccggctcttatttagtgttgatgcccaataatcctcgtgctggcggtatctcg
cgtcgtattgaaggtgatgagcgcaccgagcttaaagaagcactgtctcaattagactta
cccgatggcatgggtcttatcgtgcgcactgcaggtgtcggtaaatccggtgaagagcta
gaatgggacttgcatgtattgcaagcgcactggaacgccatccaagaagcggcacaaggt
ggtacggcgccctttttaattcatcaagaaagtaacgtcattgtccgcgctattcgcgac
tacttgcgccgggatattggtgaaatattaatcgataacccggtggtatttgaacgggcg
caaaagcacattgagctggtgcgacccgactccttaaagctggttaaactctacgatggc
gatgtgcctatgtttagccattatcaaattgaaagccaaatagagtcagcatttcaacgc
gaagtgcgcctcccctcaggtggcagtattgttatagacccaaccgaagcgctgaccagt
attgatattaactcttcacgcgccaccaaaggcggtgatattgaagaaactgccctacaa
actaacttagaagccgccgaagaaattgctcgtcagttgcgcctgcgagacctaggtggc
ttggtggtcatcgactttatcgacatgacgccggtgcgccatcagcgagaagttgaaaat
agactgcgtgatgcggtgcgccaagacagagcgcgtattcaattaggtcgcatttcgcgc
tttggtttattagaaatgtctcgccaacggctgcgtccttctttaggtgagtccagcact
catgtttgcccacgctgtttaggccaaggcaccattcgtgataatgagtcgctagcactg
gctattttacgattaattgaagaagaagcactaaaagacaataccggacaaattcatggt
caagtgccagtggatgtagcggcttatctattaaatgaaaaacgcaagtccatcgcgact
ttagagcagcgctataacgttgaaatttatattattcctaatgagcaactcgaaacgccg
catttctcggtagagcgagtgcgcagtggtgaagaagaaagcgccaccagctatagctta
aaaactcctgtggaaaaacgtgtttacacgcctcgtgatagccaaaatggccctcgtagc
gagcaacccgtgctacaaggctttagcgcaccgactcctgccccccaagccacacccacg
gtagcggccacggctgcgaggccaggtttgcttagccgtttgtttgccactttaagtcag
tggttaacaggcgataactcagcccaagctattccaggtgcgaccagtaataatacgaca
gcacgccctagcccatcggctaacaacggccaaagcgcacgtaacaatgagcgctcagcc
tcgcgtactcagccgcgtcgtgagcgaagcgatactcgcaacccgcgcaatgcgccgcgc
aagccgcgcgaagatgaacgtagcgctaccgcgcaatcagagcaaaagcccgccactaag
ggagctgcgagcgaaacacgtaatgagcgcccccgtcgcgagcgcagaaaaccgcgccgt
gagccagttgccgctcagacgcctgagactagcacctcaccgacccaagccactgtggct
cctgagtctcaggagaaaaacttagcggagcgtcgccaacgtcgccaactaagaaagcag
gttcgagtcggtgcagataatagcactgcaagtagcgcaacttctcaaaaccagagcgcc
gaagcgcccgccaaagaagcgcttaagcgcagtactatgcctaagcgcaagcgcattaac
gaagacagccgtcgtcgtcgtcgcgaagacagcatcgccgctttagtggccagccaaggt
gaagataagtggatagccagcgaagacgcactggccgccgcgcaacctaaggccactaca
gactcatctgttactcctactgaaacatcggcaaaggtagcagagcataaggccgccttg
caggcaccacctgctaacacacctgctgaaactcaggaatcaaatgccccacaatctgca
gtagcaaatccagcacagacaaaagtggcagcgactaagcctgaagtagctaacattgag
ccagtgacagcctctgaagcaactcagccagaagcggtgacagctacccaacctgaagcg
cctaaacctgaagcggttaagccagagcacgctaaggtagaggacactaaggcagaagac
acacctgtcatctcagcgccagaaataacggctaagcccattcccgagactcagcctgag
gtagcagaaagctcacctcaacctagcgagcctcagcctagcgagcgtcctacagaaatt
aaggccgaagtggtaagcgatgccaagccagtagcagaggcgtctaagtctagtgcagtg
gctgaacagccgagtgcaaacatggagccgaccgctgccactaagccagtggcagcggcg
caccctagcgccgctagcggtttataccaaggctcacgtcgtgtatcagcgcctatggtt
aaaccagaagtcattgcccaaccgccttttgtaaagccagactaccctgcttttactcgg
gagcaggtaataaccagtggtcgccatgcgggcagtacagcggcgcagcataccgcctct
gccgccatgacgtcacctcgccagctctga
DBGET
integrated database retrieval system
