Oceanisphaera avium: CBP12_07620
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Entry
CBP12_07620 CDS
T04855
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ocm
Oceanisphaera avium
Pathway
ocm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBP12_07620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocm03019
]
CBP12_07620
03400 DNA repair and recombination proteins [BR:
ocm03400
]
CBP12_07620
Enzymes [BR:
ocm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBP12_07620
Messenger RNA biogenesis [BR:
ocm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBP12_07620
DNA repair and recombination proteins [BR:
ocm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBP12_07620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Thioredoxin_8
eRF1_1
HEM4
Motif
Other DBs
NCBI-ProteinID:
ART80030
UniProt:
A0A1Y0CXH8
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All DBs
Position
1647676..1649601
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AA seq
641 aa
AA seq
DB search
MNLQQTLQHYFGFSTLRPGQEQVINTIMSGQSAAAIFPTGSGKSLCYQLPAVLLPHLTLV
ISPLLALMQDQLAFLASKNIPAASIDSTQSFEKSRAVMQGVREGQIKVLMISVERLKNER
FRNFISHVPISLLVVDEAHCISEWGHNFRPDYLKLPSYCQRLNIAQVLLLTATATPAVIN
DMQQKFKLAPDNVVITGFYRPNLYLDVLAVPEANKITTLIERLSLAPNEATIVYVTLQHT
AEQVANQLSAAGIAAHAYHAGMDQDKRQALQQAFMSGEIPCMVATIAFGMGVDKANIRHV
FHYDLPKSIENYSQEIGRAGRDGHAAHCTLLGNLAGLTVLENFVYGDTPEPSAIRTLLEY
IPRDGQPWEIMALRLANECNIRLLPLRTLLVYLELNHILEAQYSYYADYRFKFISSKEEI
LARFNPERQAFLRSVFQGSPQARTWCQVDFDAIWQQGAGERSRVVSALDYLDEHGLISLE
SKQMVEVYRVVTPHFEIAAEAARLTQLFSQKEHSEITRIQEMVDFFESNECLSHHLARYF
GDTHAPRACGHCSVCTHHQPTSLPKPQLAQLPARSQLQQWCQPLQTASSAPLSAHTLTCF
LSGISTPLLNKLKAKQQVGFGKLEQYRFYDIRRALEEPASM
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaatttacagcagaccttacaacactactttggtttttctactttacgtcccggccaa
gagcaagtcattaacaccattatgagcggtcagtcagcggcggcaatttttcctactggc
tcgggtaaatcactgtgttatcagctccctgctgtattattaccgcatttaacgctggtt
atttcccccttgttagcgctaatgcaagatcaattagcgtttttggccagcaaaaatatt
cctgctgccagcatcgactctactcaaagttttgaaaaaagccgtgctgttatgcaaggc
gtacgcgaggggcaaattaaagtattaatgatctcggtagagcgattaaaaaacgagcgc
tttcgaaatttcattagccacgtccccatttccttgctggtagtagatgaagcacactgt
atttctgagtggggccataactttcgacccgattatttaaaactgcctagctattgccag
cgtcttaatattgctcaggtactcttgctcaccgcgactgctactccagccgtgattaat
gatatgcagcaaaaatttaagctggcacctgataacgtggtgatcacgggattttatcgg
cctaacctttacttagacgtattagcggtgccagaggcaaataaaattaccaccttaatt
gagcggctatctttagcgcctaatgaagccactattgtgtatgtcactttacaacacacc
gcagagcaagtggctaaccaattaagcgctgccggcattgccgctcacgcttatcatgcg
ggtatggatcaagataagcgccaagctctacagcaggcgtttatgagcggtgaaatccct
tgtatggtggctactattgcttttggcatgggggtcgataaagctaatattcgccacgta
tttcactatgacttgcccaagtcgattgaaaactacagccaagaaattggccgagcagga
cgcgatggtcacgccgctcattgcaccttattaggcaatttagccggcttaaccgtgcta
gaaaactttgtctatggcgacacccctgagcccagtgccattagaactttattagaatat
attccgcgtgatggccagccgtgggagatcatggcactaagactggctaatgagtgcaat
atacgcctattacctttgcgtactttgctggtgtatttagagcttaaccatattttagaa
gctcaatatagttattacgccgattaccgctttaagtttatctcttctaaagaagagatc
ttggcgcgctttaacccagagcgccaagcttttttgcgcagtgtatttcaaggctcgccg
caggctagaacgtggtgccaagtcgactttgacgctatttggcaacaaggcgctggggag
cgttctcgggtggttagcgcgctagattatctagatgaacacgggcttattagccttgaa
agtaagcaaatggtggaagtgtatcgcgttgttacacctcattttgaaatagcggcagag
gcggcacgtttaacacaattatttagccaaaaagaacacagtgaaataacgcgcattcag
gaaatggtagatttctttgaaagcaatgagtgcttaagtcatcacttagctcgctacttt
ggtgacactcacgcccctcgtgcttgcggccattgttctgtgtgtacgcaccatcagccc
acttccttgccaaaacctcagctagcgcaactgccggctcgttcacaattacagcaatgg
tgtcagcctttacaaacggccagctctgcaccactcagtgctcataccttaacgtgcttt
ttatccggtattagcacgcctttgctaaataaattaaaggccaaacaacaagtgggtttt
ggtaaattagagcagtatcgtttttatgatattcgccgtgccttagaagagcccgcctct
atgtag
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