KEGG   Oceanobacillus zhaokaii: CUC15_05720
Entry
CUC15_05720       CDS       T05570                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ocn  Oceanobacillus zhaokaii
Pathway
ocn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ocn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CUC15_05720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocn03019]
    CUC15_05720
   03400 DNA repair and recombination proteins [BR:ocn03400]
    CUC15_05720
Enzymes [BR:ocn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CUC15_05720
Messenger RNA biogenesis [BR:ocn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CUC15_05720
DNA repair and recombination proteins [BR:ocn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CUC15_05720
SSDB
Motif
Pfam: Helicase_C DEAD ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AXI08445
UniProt: A0A345PEL5
LinkDB
Position
1126338..1128317
AA seq 659 aa
MDSKVEQLFESYFPNLADKFSLRVIQKTATQNLLDGNNTLCIMPTSGGKSLIYWLSGLSL
QGITIVISPLIALIDEQASKISEQGYEVLTIHGGISPKKQVDLLKKLANKELNPKFIFIS
PERMATDGLFEYGMKKRKEDINLIAIDEIHCVSQWGVSFRPFYRRIPEFLNSVFNNNWPR
VLGLTATLNANEIKDICSSFHISRKNIIKDHLLVRSEIELKKIKFTNEDEKEEKLWDLLR
IHRNEKVLVYLYRKYNKRGTEDLMKTAIEKGYNAVNFHGEMSAKARQEIIQKFKNNDVDV
IFATNAFGMGIDIPDIRVVIHFMIPESVEQYYQEVGRAARDGEASNTYLLYTNKNIRVKK
THFIDRSFPSIDKLKDVFKKITGNKTNYKTLPYFNDEDVQLCLPYYLDNDILEIGAKGIT
TLDIFSEIKDPEIERLYNLTRTKGFISTVKKSGHSPKEVSDKVYSAIINEQVNLSKNLDK
SLIVRSKYTELKADQIKILEQYIEDKRTYKHKLLDYFTYLLEVCENSRELHQEIGRYLGV
DKHNLNKIYRTRKGDLVRSKSEVIIANLLYEANVNYEYEKKLYYDDQNWIEPDFTIEVGE
KDIYWEHLGMIGTETYDKRWLKKIDIYEKYYPDQLEITYENPALSDSARNIIEKIKVME
NT seq 1980 nt   +upstreamnt  +downstreamnt
atggattctaaggttgagcaattatttgaaagttattttcctaatttagctgataaattt
tcattaagggtgattcagaaaacggctacacaaaatttgttagatggcaataatacactt
tgtattatgccaacaagtggtgggaaatctcttatatactggctgtctggattatcctta
cagggaattacaattgttatttctccattaattgctttaatagatgaacaagcaagtaaa
attagcgaacaaggttatgaagttttaactattcatggtggaatatctcctaagaaacaa
gtcgatttattaaagaaacttgctaataaagaattaaatcctaaatttatttttattagt
ccagaaagaatggcgacggatggactatttgaatatggtatgaagaagcgaaaagaagat
ataaacttaattgccattgatgaaatacactgtgtgagccaatggggagttagttttcga
cctttctataggcgaatcccagagttcttaaatagtgtttttaacaataattggcctaga
gtattaggtctaactgctactttaaatgctaatgaaattaaagatatatgtagttctttt
catatatccagaaagaatattataaaagaccaccttctagtacgctctgagattgaacta
aaaaagataaagtttactaatgaagatgaaaaagaggagaaactttgggatttgctacgg
attcatagaaatgaaaaagtattagtttatttgtatcgtaagtataataaaagaggtaca
gaagatttaatgaaaaccgctattgaaaaaggctataatgcggtgaatttccatggtgaa
atgtcagcgaaagctagacaagaaattattcaaaagtttaaaaataatgatgttgatgtt
atctttgcaaccaatgcttttggtatgggtattgatattcctgatattagggtcgttatt
cacttcatgattccagagtcggtggagcagtattatcaagaagttggaagagctgcaaga
gacggcgaagcttcaaatacgtacttactttatactaataaaaacataagagtgaagaaa
acacactttattgatcgttcttttccctctattgataagctaaaagatgttttcaaaaag
attactggaaataagacaaactataaaacactaccatattttaatgatgaggatgtacag
ctatgtctcccgtattatttggacaatgatatcctcgaaattggggctaagggtattacc
actctagatattttctcagaaataaaggatcccgaaatagaaagattatataatttaacg
aggactaaagggtttattagtactgttaaaaagagcgggcattctccgaaagaagttagt
gataaagtctattcagcaataataaatgaacaagttaatctttctaaaaatcttgataaa
agcctaattgtaagaagtaaatatacagaattaaaggctgaccaaattaaaatactggaa
caatacatcgaagacaagcgtacatataaacacaaacttttagattattttacatactta
ttagaggtgtgtgaaaattctagagaactccatcaagaaattggtcgatatttaggtgta
gataaacataaccttaataaaatttacagaacacgtaaaggagatttagttcggtcaaaa
tctgaagtaataattgcaaatcttctttatgaagcaaatgttaattatgagtatgaaaaa
aaactttattatgatgatcaaaattggattgaaccagactttacaattgaagtaggagaa
aaggacatatactgggaacatctcggtatgattggaactgagacttatgataaaagatgg
ttgaagaagatagatatttatgaaaaatattatccagaccaattagaaattacatatgaa
aacccagcgttgtctgattcagcacgaaatataatagaaaaaattaaagttatggaatga

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