KEGG   Oligotropha carboxidovorans OM4: OCA4_c11710Help
Entry
OCA4_c11710       CDS       T01967                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
oco  Oligotropha carboxidovorans OM4
Pathway
oco03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OCA4_c11710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oco03400]
    OCA4_c11710
Enzymes [BR:oco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OCA4_c11710
DNA repair and recombination proteins [BR:oco03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OCA4_c11710
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AEI02313
LinkDB All DBs
Position
complement(1250290..1252959)
Genome map
AA seq 889 aa AA seqDB search
MTRKKLSVYQTKRDFTKTAEPSGAAKVTRGKLPRFVIQKHDATRLHYDLRLEIDGIFKSW
AVTRGPSLDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGFWHSDDPAGGL
KKGDLKFTLEGKKLHGEWVLVRMRHDRTGGKRTNWLLIKHRDEAAREGEDILDQDRSVAS
GRTMEQIAQGKGRGPTPFMTAKGNAKPSRSKADRVWQSNQGTAAALRAKSVAKTKTLAKP
VQAAVRKVDHLPEFIAPQLCKSVARPSDGADWIHEIKFDGYRMQLHIQGGKVHLRTRKGL
DWTDKFPAIAKAAAKLPECIIDGEIVALDHEGHPSFASLQAALSDGDTDELIFFAFDLLF
DKDSDLRRLPLTERKARLEQLLDRQSKTSVIRYVAHFDTGGDAVLKSACRLALEGIISKR
RDALYHSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMVGVPHEDHLAYVGIVGTGYG
QAVVKRIMPELKKVASTTNPFGGKNAPRKTTGVHWVKPELVAEIEFAGWTGDNMVRQAAF
KGLRKDKSADEVQVDEPVVTPIAEPAPRKTNTKANTKTRAKAATRTSSSGNAVVMGLTIS
KPDKPLWPDDGKGEPVTKLDLARYMETMGEYLLPHIEGRPCSIIRAPDGIEGEKFFQRHA
TAGMSNLIDQVRVSGDRKPYIQIDRIEGLVAAAQIGGVEFHPWNCAPNEPDVPGRLVFDL
DPAPGVNFTDVITAARDLHDRLSSLGLESFCKTTGGKGLHVVTPLKDAKKDRIDWKAAKA
FAQAVCQAMAADAPERYLINMSKKKREGKIFLDYLRNDRMSTAVAPFSPRGRDFAPVAWP
ITWAQARTGLDPLKFTLRTVPALVKTSKAWAGYDRAARSLKDAIRKMGG
NT seq 2670 nt NT seq  +upstreamnt  +downstreamnt
gtgacccgtaaaaagctctccgtctaccagaccaaacgcgacttcacgaaaaccgcggag
ccctccggcgctgcaaaagttacgcgtggaaagttgccgcgtttcgtcatccagaagcac
gatgcgacgcgactgcattacgatcttcggctcgaaatcgacggcatcttcaaatcatgg
gcggtgacgcgcggcccctcgcttgatccgaaggacaagcgcctcgccgtcgaggtcgag
gatcatccgctcgactacggcgatttcgagggcacgattccgaaaggccagtatggcggc
ggcacagtgatgctgtgggaccgcggcttctggcacagcgacgatcccgcaggcggccta
aagaagggcgatctcaaattcacgctggagggcaagaagctgcacggcgagtgggtgctg
gtgcggatgcgccatgaccgcaccggtggcaaacgcaccaactggcttctcatcaagcat
cgcgacgaggccgcgcgcgagggcgaggacattctcgatcaggatcgctcggtcgcatcc
ggccgcacgatggagcagatcgcgcaaggcaagggccgcgggccgacgccgttcatgacg
gcgaagggaaacgcaaagccaagccgctccaaagccgaccgcgtctggcaatcgaaccag
ggcacagcggcggcattgcgcgcgaaatcggtggcaaaaacgaagacgctggcaaagcca
gtgcaggcagccgtgcgcaaggtcgatcacctgccggaattcatcgcaccgcaactgtgc
aagtccgttgcccgcccgtccgatggcgcggactggattcacgaaatcaagttcgatggc
taccggatgcagttgcacatccaaggcggcaaggtgcacttgcgcacgcgcaagggcctc
gactggaccgataagtttccggctatcgccaaggcggccgccaagctgccggagtgcatc
atcgatggcgagatcgttgcactcgaccacgaggggcacccgagcttcgcctcgctgcag
gcggcgctatctgatggcgacaccgatgaactgatcttcttcgcgttcgaccttttgttc
gataaagacagcgacctgcgccgcctgccgctcaccgagcgcaaagcgcggctggaacag
ttgctcgaccgccagagcaaaaccagcgtcatccgttatgtcgcgcatttcgacaccggc
ggcgacgcggtgttgaagtcggcctgccgtctcgcgctcgaaggcatcatctccaagcgg
cgcgacgcgctctatcattccggtcgcaccgaaagctggacaaaagcaaagtgtcgcgcg
gggcacgaggttgtcatcggcggctggaaaaccaccgcgggcaaattccgctcgctgatg
gtcggcgtgccgcatgaggatcatctcgcttatgtcggcatcgtcggcaccggttacggt
caggccgtcgttaaacggattatgccggagttgaagaaggtggcttcgacgacaaatccg
ttcggcggcaagaacgcgccgcggaaaacgacgggcgtgcactgggtcaaacccgagctt
gtcgccgagatcgagttcgccggctggaccggtgacaacatggtgcggcaggccgcgttc
aaaggcctgcgcaaggataagtcggcagacgaagtgcaggtcgacgaaccggtcgtcacg
cccatcgccgaacccgcaccacgcaagaccaacaccaaggccaatacgaagactcgcgcg
aaagctgccacacgcacgtcctcctccggcaacgccgtggtgatgggcctcaccatttcc
aaaccggacaaaccgctctggccggacgatggcaaaggcgagccggtcaccaagctcgat
ctcgcccgctacatggagaccatgggcgaatatctgctcccgcacatcgaagggcggccc
tgctccatcatccgcgcgccggatggcatcgagggcgagaagttttttcagcgtcacgcc
acggccgggatgtcgaacctgatcgatcaggttcgcgtctccggcgaccgcaagccttac
atccagatcgatcggatcgaagggcttgtggcggcggcgcagatcggcggtgtcgaattc
catccgtggaattgcgcgccgaacgaacccgatgtgccgggccgtctggtgttcgatctc
gatcccgcgccgggcgtcaactttaccgatgtcatcaccgccgcgcgcgatctgcatgat
cggttgtcgtcgctcggactcgagagcttctgcaagaccaccggcggcaagggcctgcat
gtggtcacgccgttgaaggatgcgaagaaggatcgcatcgactggaaagcggcgaaggcc
tttgcacaggcggtctgtcaggcgatggcggcggatgcgccggagcgctatctcatcaac
atgtcgaagaagaaacgcgagggcaaaatcttcctcgactatctgcgcaacgaccgcatg
tcgacggcggtcgcgccgttctcgccgcgcgggcgcgacttcgctccggtggcatggccg
atcacctgggctcaggcgcgcacgggcctcgatccgctgaagttcacgctacgcaccgta
cccgcgctggtgaagacatcgaaggcgtgggccggttacgaccgcgccgcgcgctcgctg
aaagatgcgatccggaaaatgggtggctga

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