KEGG   Oryctolagus cuniculus (rabbit): 100340318Help
Entry
100340318         CDS       T03373                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    100340318 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100340318 (LIG4)
Enzymes [BR:ocu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100340318 (LIG4)
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     100340318 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase RTT107_BRCT_5 mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 100340318
NCBI-ProteinID: XP_008258394
Ensembl: ENSOCUG00000015734
UniProt: G1TA35
LinkDB All DBs
Position
8
AA seq 911 aa AA seqDB search
MAASQTAQTVASHVPFADLCSTLERIQRSKGRADKIRHFSEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPAATHG
DAGDFAMTAYFVLKPRCLQKGSLTIQQVNDLLDSVASNNSAKRKDLTKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGVSQQTIFSAFHADAVELHNVTTDLEKVCRQLHNPSVGLSDISI
TLFSAFKPMLAAVADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYTD
QFGAAPHEGSLTPFIHSAFKTESQSCILDGEMMAYSPDTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRNRYEILSSVFTPVPGRIEIVQKTLAHTKNEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGLRGGMM
SHFLCAVAERPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPGSILC
GTEKPEVYIEPRNSVIVQVKAAEIVPSTMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLE
QLRGRASGKLASKHLCVGADDEPREKKRKAAPKMKKVIGIIEHLKAPNLSNINKVSNIFE
DVEFCVMSGTDSHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENIRVKNIISSDKHDV
VKPAWLLECFKTKSCVPWQPRFMIHMCPSTKKHFALEYDCYGDSYFVDTDLNQLKEVFSG
IKNSDEQTPEEMASVIADLEFRYSWDQSPLSMFRHHTVYLDLYAVINDLSTKIEGTGLAT
KALQLRFHGAKLVSCLAEGVSHVIIGDDHSRVPDFKAFRRTLKRKFKILQEDWVTDSIDK
SELQEENQYLI
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atggctgcctcacagactgcacaaactgttgcatctcatgttccttttgcagatctgtgt
tcaactttagaacgaatacagagaagtaaaggacgtgcagacaaaatcagacattttagt
gaatttttggactcttggaggaaatttcatgatgcccttcataagaaccaaaaagatgtc
acagactcattttatccagcaatgagacttattcttcctcagctagagagagagagaatg
gcctatggaataaaggaaactatgcttgctaagctttatattgaattacttaatttacct
agagagggaaaagatgcccttaagcttttaaattacagaacacctgctgcgacacatgga
gatgcaggtgactttgcaatgactgcctactttgtgttgaagccaagatgtttgcagaaa
ggaagcctaaccatacagcaagtaaacgaccttctagactcggttgccagcaataactct
gccaaaagaaaagacctaaccaaaaagagtcttcttcagctcataacacagagttcagcg
cttgaacagaagtggctcatacggatgatcgtaaaggacttaaagcttggtgttagtcag
caaactatattttctgcctttcatgctgatgctgttgagctgcataatgtcaccaccgat
ctggaaaaggtctgtaggcaactacataatccttccgtgggactcagtgatatctctatc
actttattttctgcctttaaaccgatgttagctgctgtggcagatattgagcgcattgaa
aaggatatgaagcaccagagcttctacattgaaaccaagctggatggtgagcgtatgcag
atgcacaaggacggggatgtctatcagtacttctcccggaacggatataactacactgac
cagtttggtgctgctccacatgaaggttctctcaccccattcattcacagtgcattcaaa
acagagtcacagagctgtatcctcgatggggagatgatggcctacagcccagatacacag
acttttatgcaaaaggggaataagtttgacattaaacgaatggtagaagattctgatctg
caaacatgttactgtgtttttgatgtattgatggttaataataaaaaacttggacgtgag
accctgagaaacagatatgagattcttagtagtgtttttacaccagtgccaggtagaata
gaaatcgtgcagaaaacactagctcataccaagaatgaagtaattgatgcgttgaacgaa
gccatagataagagagaagaaggaatcatgataaaacatcctctgtctatttacaagcca
gacaaaaggggtgaagggtggttgaaaattaagccagagtatgtcagtggactaatggat
gaactggacatcttaattgttgggggctattggggtaaaggtctacggggtggaatgatg
tctcactttttgtgtgctgtggcagagaggccacctcctggtgaaaagccatctgtattt
catactctctgtcgtgttggctcaggatacaccatgaaagaactatatgatctgggtttg
aaattggccaaacactggaagccatttcatagaaaagctcctccaggtagtattttatgt
ggaacggagaagccggaagtatacattgaacctcgcaattctgtcattgtccaagttaag
gcagcagagattgtccccagtactatgtacaaaactggctgcaccttgcgttttccacga
atcgagaagataagagatgacaaagaatggcatgaatgcatgactctggatgacttagaa
caactcagagggagagcgtctgggaagctcgcatccaaacacctctgtgtaggcgctgat
gatgaaccccgagaaaaaaagcgtaaagctgcccccaagatgaagaaagttattggaatt
attgaacatttaaaagcaccgaacctttctaacataaacaaggtttctaatatatttgaa
gatgtagagttttgtgtcatgagtggaacagacagccatccaaagcctgacctagagaac
agaatcgcagaacttggtggttatatcgtacagaatccaggcccggacacgtactgtgta
attgcagggtctgagaacatcagagtgaaaaatattatttcttcagataagcacgatgtt
gtcaagcctgcgtggcttctggagtgttttaagaccaaaagctgcgtgccttggcagcca
cgctttatgatccacatgtgcccatcaacaaaaaaacattttgcccttgaatatgattgt
tatggggatagttattttgttgacacagatttgaaccagctgaaggaagtattttcagga
attaaaaattctgatgagcagactcccgaagaaatggcttctgtgattgctgatttagaa
tttcgttattcctgggaccagtctcctctcagtatgtttcgacaccacactgtctatttg
gacttgtatgctgtgattaatgacttgagcaccaaaattgagggaacaggattagctact
aaggccttgcagcttcgatttcatggagcaaaattagtttcttgtttagctgagggagtg
tctcatgtaatcattggggacgatcatagccgtgttccggattttaaagcttttagaaga
actcttaagagaaagtttaagatcctgcaagaagattgggtaactgattcaatagacaag
tctgaattacaagaagaaaatcagtatttgatttaa

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